Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00275 ATGAAAATCCCTTGTTGTTCGGTTTGCCAAACGCGGTACAACGAAGAAGAACGAGTTCCGCTTCTTCTTCAATGTGGCCATGGATTCTGCAGAGACTGTCTTTCTAGAATGTTCGCAGCTTCTTCAGATGCTTCTCTCACGTGTCCGCGGTGTCGCCACGTGTCAACCGTCGGCAACTCTGTTCAAGCGTTACGCAAAAACTACGCCGTTCTTTCGTTAATCCACTCCGCCGCTGATGTTTCCGCCGCCGGAGACTGTGACTTAACcgacgaggaggaagatggagatgacggcgaagttgacgacggcgacgatgagaaacgacgccgGAACAGCCGCGGCTCGCAGACGTCGAGTTCCGGTGGTTGTGCTCCGGTGATTGAAGTCGGTGCGCATCAGGATTTGAAACTTGTGAGAAGGATTGGGGAAGGGAGGAGAGCTGGTGTGGAGATGTGGACAGCGGTGATCGGAGGTGGACGGTGTCGGCATCATGTGGCGGTGAAGAAAGCGGTTATGATTGAAGGAATGGATTTGGATTGGATGTTAGGGAAATTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTTTGTACTTTTCATGGAGCGATGAAGGTTGATGAGAGTTTGTGTCTTGTGATGGATAGGTGTTATGGATCGGTTCAATCTGAGATGCAGAGAAATGAAGGAAGACTCACTTTGGAGCAAGTTCTAAGATATGGGGCAGACGTTGCACGAGGGGTTGTTGAGCTTCACGCTGCTGGCGTTGTTTGCATGAATTTAAAGCCTTCCAATCTACTTCTGGATGCAAATGGTCATGCTGTGGTTTCTGATTACGGACTTGCTACAATTTTGAAGAAGCCCTCATGCTGGAAGGCTCGGCCTGAGTGTGACTCCTCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGTCCACACTATACGGCCCCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTGCCATTCCTTGGGCTGGTTTAAGTGCAGAGGAAATCTATCGAGCAGTTGTCAAGGCGAAGAAACAGCCTCCACAATATGCTAGTGTGGTTGGTGGTGGAATTCCAAGGGAATTGTGGAAGATGATTGGAGAGTGCTTACAATTCAAGCCATCTAAAAGACCTACTTTTAATGCAATGCTGGCAATATTTCTCCGTCATTTGCAAGAAATACCTCGCAGCCCGCCTGCAAGCCCTGATAATGACTTTGTTAAGGGATCTGTATCAAATGTGACGGAGCCTTCCCCAGTACCTGAATTAGAAGTTCCTCAGGACCCAAATCGTCTTCATCGACTTGTGTCTGAAGGGGATGTTACTGGTGTTAGGGACTTTCTGGCAAAGGCTGCATCAGAAAATGGAAGCAACTACATATCTTCTCTGTTGGAAGCTCAAAATGCTGATGGACAAACAGCTCTCCACTTGGCTTGTAGACGTGGCAGTGCAGAACTTGTCGAGACAATTCTGGAGTATGAAGAGGCAAATGTTGATGTCTTGGACAAAGAGGGGGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGGTCCCATGAATGTGTGCGCAGCCTCATAAAAAGAAATGCTAGTGTGAGGTCACGATTGAGAGATGGCTTTGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGCCAGCCAGATTGCATGCGAGAGTTACTTTTAGCCGGAGCCGATCCCAATGCAGTGGATGATGAAGGTGAATCTGTACTGCATAGGGCAGTTGCCAAGAAGTTTACAGACTGTGCTCTTGTGATAGTGGAAAATGGAGGCTGTCGATCAATGGCCATCTTGAATTCAAAAAATCTGACACCGCTGCACTTGTGTGTGGCAACATGGAATGTGTCTGTTGTGAAGAGATGGGTGGAAGTTGCAAATGCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAATTGAGACTTGGTGCGGATATTGCGAAGATTCACAGAATGGGAGGACAGCTTTGCATACCGCTGCTATGACAGATGATGTGGACTTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAATATTCGCAATGTGCACAATAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCGGCTGGGGCAGATTATAATTTGCAGGATGATGATGGTGATAATGCTTTCCATATAGCAGCAGAGACAGCAAAAATGATACGTGAAAATTTGGACTGGCTTATTGTTATGCTAATGAATCCCGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACACTACGGGACATCTTAGAGGCTTTACCCCGAGAATGGATATCCGAAGATCTGATGGAGGCACTCATGAATAGAGGAGTTCATTTATCTTCGACAATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACATACGGGTGGCAAGGTGCTAGAGCAAAGAGTGTTGGCTTTGTGCATAGTGTTCCAGACAGAGATAATCTCATCGTTTCATTTTGTTCGGGGGACGTTCATGTTCTGACAAATGAAGTTGTAAAAGTCGTTCCATTGGACAGGGGCCAACATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGGTTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTTTTATGTGTTGACGATGATGGAATCCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAGCGGGTTGAGGAGTTCAAGGTTGGAGATTGGGTTCGTATTCGTCCAACCCTTACATCTGCAAAACATGGATTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCTGACAGTAGTCTGTTAATTGAATTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTCCTCCTTTTAGGATTGGTGATAGGGTGTGTGTGAAGCGATCAGTCGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAAAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCATCAGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTATCTTCTCCAAAATATGGTTGGGAAGATATTACAAGGAACAGTATTGGGGTAATTCATAGCTTGGAAGAAGATGGTGATATGGGTGTTGCCTTTTGCTTCAGAAGTAAACCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCTGCTTTAGAGGTGGGACAAGAAATTCATGTGATGCAATCTGTTTCTCAGCCACGACTTGGGTGGTCAAATGAAACTCCGGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTCAATGTGAGGGTCGCTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGACTTCCGGGATTTGAGGTTGGGGATTGGGTACGCTCTAAACCAAGCCTGGGAACTAGACCGAGTTATGACTGGAATAGTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGCTATTTGGAGTTGGCTTGTTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCATAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGATCTGGTTTGGTTGAACCCAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGTATTATAACCAGTATTCATGCAGATGGAGAAGTCAGGGTCTCATTCTTTGGTTTGCCGGGGCTGTGGAAAGGCGATCCTTCAGATCTGCAGACAGAAAAAATATTTGAAGTGGGAGAATGGGTGAGATTGAAAGAAAACACAAATAATTGGAAATCAATTGGGCCAGGTAGTGTTGGTGTCGTTCAAGGAATAGGGTATGAAGGAGATGAAATTGACAGAAGCACTTTTGTTGGCTTTTGTGGGGAGCAAGAAAAATGGGTAGGACCTAGTTCCCATCTTGAAAGAGTTGACAAACTATTCGTGGGACAGAAGGTTAGAGTTAAACATTATGTAAAACAACCTAGATTTGGATGGTCAGGGCACACCCATGCTAGTATTGGGACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCGGGTTCGAAAACATGGATGTTGGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTAAAGGTTAGAGCATCAATTTCAACTCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCATTGGGGTTGTACATCGGATGGAAGACGATAATTTATGGGTGGCATTCTGTTTTGTGGAGAGGTTATGGCTTTGTAAAGCATTGGAAATGGAACGGGTCAGGCCATTCAAAGTGGGTGACAAAGTAAGGATCAGAGATGGACTGGTATCGCCACGGTGGGGATGGGGGATGGAGACACATGCCAGCAAAGGACAGGAGACCCTGCTGATCTTGCCCTTGATGAGAACTGAGGTGCAATTTTATAGAGTGAAAGGATTGAAGTTATGGAGAAAGGAAAGATTGAGTTGCTGGCTGAGATATAGAGATTTAAGGCGAATTATTGGCAGTTGGCCCATTTATATTCATTATTACTCACATATATAA 4884 0.4507 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRDCLSRMFAASSDASLTCPRCRHVSTVGNSVQALRKNYAVLSLIHSAADVSAAGDCDLTDEEEDGDDGEVDDGDDEKRRRNSRGSQTSSSGGCAPVIEVGAHQDLKLVRRIGEGRRAGVEMWTAVIGGGRCRHHVAVKKAVMIEGMDLDWMLGKLEDLRRASMWCRNVCTFHGAMKVDESLCLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADVARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDFVKGSVSNVTEPSPVPELEVPQDPNRLHRLVSEGDVTGVRDFLAKAASENGSNYISSLLEAQNADGQTALHLACRRGSAELVETILEYEEANVDVLDKEGDPPLVFALAAGSHECVRSLIKRNASVRSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKFTDCALVIVENGGCRSMAILNSKNLTPLHLCVATWNVSVVKRWVEVANADEIAEAIDIPSPIGTALCMAAASKKDHEIETWCGYCEDSQNGRTALHTAAMTDDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLMNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALMNRGVHLSSTIFEVGDWVKFKRTVTTPTYGWQGARAKSVGFVHSVPDRDNLIVSFCSGDVHVLTNEVVKVVPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVPPFRIGDRVCVKRSVAEPRYAWGGETHHSVGKISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPALEVGQEIHVMQSVSQPRLGWSNETPATVGKIVRIDMDGALNVRVAGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVHSFKVGQYVRFRSGLVEPRWGWRGAQPESQGIITSIHADGEVRVSFFGLPGLWKGDPSDLQTEKIFEVGEWVRLKENTNNWKSIGPGSVGVVQGIGYEGDEIDRSTFVGFCGEQEKWVGPSSHLERVDKLFVGQKVRVKHYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEEKELCIGDWVKVRASISTPTHHWGEVSHSSIGVVHRMEDDNLWVAFCFVERLWLCKALEMERVRPFKVGDKVRIRDGLVSPRWGWGMETHASKGQETLLILPLMRTEVQFYRVKGLKLWRKERLSCWLRYRDLRRIIGSWPIYIHYYSHI 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00275 1627 CDD RING-HC_ScPSH1_like 5 52 - -
Car05g00275 1627 Pfam Ankyrin repeats (3 copies) 484 566 IPR002110 GO:0005515
Car05g00275 1627 Pfam Ankyrin repeats (3 copies) 697 772 IPR002110 GO:0005515
Car05g00275 1627 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Car05g00275 1627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Car05g00275 1627 Gene3D - 572 676 IPR036770 -
Car05g00275 1627 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 708 737 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 573 602 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 741 770 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 504 534 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 774 809 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 538 567 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 641 672 IPR002110 GO:0005515
Car05g00275 1627 SMART ANK_2a 606 637 IPR002110 GO:0005515
Car05g00275 1627 Pfam Mind bomb SH3 repeat domain 892 967 IPR040847 -
Car05g00275 1627 Pfam Mind bomb SH3 repeat domain 1225 1346 IPR040847 -
Car05g00275 1627 Pfam Mind bomb SH3 repeat domain 1099 1217 IPR040847 -
Car05g00275 1627 Pfam Mind bomb SH3 repeat domain 973 1093 IPR040847 -
Car05g00275 1627 Pfam Mind bomb SH3 repeat domain 1352 1473 IPR040847 -
Car05g00275 1627 PRINTS Ankyrin repeat signature 724 738 IPR002110 GO:0005515
Car05g00275 1627 PRINTS Ankyrin repeat signature 505 520 IPR002110 GO:0005515
Car05g00275 1627 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1572 - -
Car05g00275 1627 ProSiteProfiles Ankyrin repeat region circular profile. 504 526 - -
Car05g00275 1627 Pfam RING-type zinc-finger 6 49 IPR027370 -
Car05g00275 1627 ProSiteProfiles Ankyrin repeat region circular profile. 708 739 - -
Car05g00275 1627 ProSiteProfiles Protein kinase domain profile. 135 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00275 1627 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Car05g00275 1627 Pfam Ankyrin repeats (many copies) 576 623 IPR002110 GO:0005515
Car05g00275 1627 SUPERFAMILY RING/U-box 5 61 - -
Car05g00275 1627 Pfam Protein kinase domain 162 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00275 1627 Gene3D - 459 571 IPR036770 -
Car05g00275 1627 SMART ring_2 6 51 IPR001841 -
Car05g00275 1627 ProSiteProfiles Ankyrin repeat profile. 573 605 IPR002110 GO:0005515
Car05g00275 1627 MobiDBLite consensus disorder prediction 85 125 - -
Car05g00275 1627 ProSiteProfiles Ankyrin repeat profile. 504 537 IPR002110 GO:0005515
Car05g00275 1627 Gene3D Transferase(Phosphotransferase) domain 1 218 439 - -
Car05g00275 1627 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1572 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Car05g00275 1627 SUPERFAMILY Ankyrin repeat 497 816 IPR036770 -
Car05g00275 1627 SUPERFAMILY Protein kinase-like (PK-like) 131 444 IPR011009 -
Car05g00275 1627 MobiDBLite consensus disorder prediction 85 101 - -
Car05g00275 1627 Gene3D - 679 841 IPR036770 -
Car05g00275 1627 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Car05g00275 1627 ProSiteProfiles Ankyrin repeat region circular profile. 741 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00275 Car-Chr5 6785933 6805425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00275 197 418 MAP Kinase Kinase Kinase AT2G31800 29.646 7.37e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Car05g00275 Pkinase 5.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00275 K16279 - gmx:100777576 2899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00275 05 6785933 6805425 Car05g00275 05 6785933 6805425 ECH