Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00272 ATGGCTGAAGGAAGTCCTATAACTGATATTTCTACTGATGGTGACACCGATGATAAGAATCAACGGTTTGATAGAAGTCGGTCCCTTGCTGCAATGGCTTCTGACTCCGGTGACAGATCAAAGAATAAATCAGATCAAAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTCCAACAGTTGGAAAGTAGCCGTTTGAAGTTCACTCAACTGGAGCAAGAGCTTCAGCGAGCTCGGCAACAGGGAATCTTTATATCAAGCTCAGGCGATCAAGCACACTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGGAGCTGTAAATTCTCATGCGAGCGAAACAGAACTTCACATGATAATGGATGGTATATTGGCACATTATGATGAGATATTTAGACTTAAGGGCATTGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCTGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGATCGTCTGAACTCCTCAAGCTTCTGATAAATCAATTGGAACCTCTCACAGATCAGCAGCTAGTAGGCATTACAAACTTGCAACAATCTTCGCAAGAGGCGGAAGACGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTAACTACTGGACCACTTGGGTCCTCTAGTTCATCAGGGAATGTGGCAAATTACATGGGTCAGATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAGGGGTTTATTCGACAGGCCGACAACTTGCGGCAACAAACACTGCAACAAATTCACCGCATATTGACCACTCGCCAGTCAGCTCGCGCGCTCCTTGCAATTCACGACTACTTTTCCAGATTGCGTGCTCTTAGCTCCCTTTGGCTTGCGCGTCCAAGAGAATGA 999 0.4615 MAEGSPITDISTDGDTDDKNQRFDRSRSLAAMASDSGDRSKNKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKFTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRGAVNSHASETELHMIMDGILAHYDEIFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLINQLEPLTDQQLVGITNLQQSSQEAEDALSQGMEALQQSLSETLTTGPLGSSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00272 332 SUPERFAMILY Leucine zipper domain 47 89 IPR046347 GO:0003700|GO:0006355
Car05g00272 332 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351|GO:0043565
Car05g00272 332 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 332 - -
Car05g00272 332 Pfam bZIP transcription factor 47 85 IPR004827 GO:0003700|GO:0006355
Car05g00272 332 PANTHER TRANSCRIPTION FACTOR TGA9 1 332 - -
Car05g00272 332 ProSiteProfiles DOG1 domain profile. 112 329 IPR025422 GO:0006351|GO:0043565
Car05g00272 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700|GO:0006355
Car05g00272 332 SMART brlzneu 43 106 IPR004827 GO:0003700|GO:0006355
Car05g00272 332 Coils Coil 123 143 - -
Car05g00272 332 Coils Coil 66 93 - -
Car05g00272 332 MobiDBLite consensus disorder prediction 1 49 - -
Car05g00272 332 Gene3D - 46 98 - -
Car05g00272 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00272 Car-Chr5 6641055 6649642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00272 1 332 bZIP Transcription Factor Family AT3G12250 77.711 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Car05g00272 DOG1 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00272 K14431 - qsu:112028986 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00272 05 6641055 6649642 Car05g00272 05 6641055 6649642 ECH