Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00233 ATGTCCACAGCAGATCCACCGTCTTCCACCACCACCACCGTCACCGGCGTTGGTCTCGGCTACGGCATCGCAATTGCCGTAAGCATCCTCGTTCTCATCTCCACCATCATGCTAGCATCTTACTTCTGCGTCCGCATAAAAGCCCACGGCCGCCGCGGCACCTTCCATTTCCACACCGACATCGAAAACATCCGTCGTGAAAATAACATCAACAACTCGACCCAGCCCGGCCCGTTTATTTTGGGCCTAGAAAAGCCCATGATTGAAGCATATCCGAAGATTATTATTGGAGAGAGCAGACGGTTGCCTAAGCCCAACGAAGGCCCGTGTGCTATTTGCTTGTCGGATTATCTTCCAAAGGAAACGATACGGTGCGTTCCGGATTGTCAACATTGTTTCCACGTGGAGTGTGTTGATGAGTGGCTTCGGATGAGTGCCACGTGTCCTTTGTGTCGGAATTCTCCTGCTCCGTCGCCGATTCCTACGCCGTTGTCGGAGCTTGTTCCTCTGGCATTTCACGCTAGTAGTATCAGAAACAACTTTAGATTGAAGTCGCGCTCAATTCAACTCGCCGGTAAACGCGGCCGGAAAACGACGTCCGCCGCCGTAACAGAACTTCATCGCAACATATTTAACCGCACCCCGTACCGCGCTAAAGCAAACGGCACGATTTACAACACAGGAACTTATTTGTTTTCAGTTAATCCTGTACTCCATTGGCCAAATTAG 729 0.5103 MSTADPPSSTTTTVTGVGLGYGIAIAVSILVLISTIMLASYFCVRIKAHGRRGTFHFHTDIENIRRENNINNSTQPGPFILGLEKPMIEAYPKIIIGESRRLPKPNEGPCAICLSDYLPKETIRCVPDCQHCFHVECVDEWLRMSATCPLCRNSPAPSPIPTPLSELVPLAFHASSIRNNFRLKSRSIQLAGKRGRKTTSAAVTELHRNIFNRTPYRAKANGTIYNTGTYLFSVNPVLHWPN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00233 242 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Car05g00233 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 157 IPR013083 -
Car05g00233 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 158 - -
Car05g00233 242 CDD RING-H2_EL5_like 110 152 - -
Car05g00233 242 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 20 158 - -
Car05g00233 242 Pfam Ring finger domain 110 152 IPR001841 -
Car05g00233 242 SUPERFAMILY RING/U-box 104 157 - -
Car05g00233 242 SMART ring_2 110 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00233 Car-Chr5 5583541 5591369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00233 1 173 C3H Transcription Factor Family AT5G07040 59.195 4.11e-67 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00233 05 5583541 5591369 Car05g00233 05 5583541 5591369 ECH