Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00229 ATGAAGCTACATGAATGGAGttatgatgtgttcctaagttttagaggtgaagatacaagaacaagcttcacagggtctctctatcatggtttgcatcaaaagggtatcaatgttttcatagatgatgaaaagcttagaagaggggaacagatatctccatctcttcttacagctattgaacaatcaagaatttcaatcattgtgttttctcaaaactatgcatcttctacttggtgtcttgatgagcttgttaagattcttgagtgttgcaaaacaaaggggcaattagtttggcctgttttctatcatgttgacccttcttttgtaagacatcagacaggaagttttggaacagcaatggctaaacatgaagtcacattcaagggtgatgttgaaaagttgaggaagtggaaaagagctttgtttgatgcagccaatttgtcaggttggagcttagaaaaAGGGTATGAATTTGAGCTTATCCTAAGGATTATTGAGGAGGTCTCAAATGAATTAAATCAAACCCTTttgcatattgccgagcacccggtcggactagaaactcgcatatccgaagtgaaatcacttttgaataatgaatcttgtgaagatatttgtttcattggaatccatggacatggaggaataggcaaaacaacaattgcaagagctttatacaactcaattgctaatcagtttgaagtcacaagtttcatttctgatataagagaaagttcaactcaacatcatggcttagttcaacttcaagaatcacttctttatgaaacagttggtgacaagaacactaagctaggaaatgttaataaaggaattcctattataaagaaaagattatgttgcaaaaaagtacttttgattcttgatgatgttgacaaactagagcagctcgaagcattagcaggcggacgcgattggtttggttccggaagtaagataatcataacaactagagataaacaattgctagcttctcatcaagtagataaaacatatgaagttaagaaactaaaccatgaagaagcttttgaactctttacatggaatgccttcaaaagcaaggcacctattggaggctatatggagatttccaacaatgttgtgtcatatgctgagggacttccattggctttgaaagtaatgggatcaaatttgtttggtaaatcagttgaggaatggaaatctgcattggaaaaatatgaaaaaattcctagtaaagaggttcaaaatgtacttagagtaacttatgataatttagaagagaatgaaagggaaattttcttagatatagcttgtttcttcaagggagagacaatggaatatgttgagaagacacttcaagcttgtggtttctatccgaaattcggcataagtgtacttattgataaatctcttgtgagtgttgatgaatataatagattgaaaatgcatgatctgatacaagacatgggtagggaagttgttagagaagtttcgccgttagagcctggaaaacgcagtagattatggtatcatgaagatgttattgaagtACTAACTGAAAACTCGGGTACTTATAGAGTTCAAGGAATGATGGTTGATCTCCCTGATGAATATATGGTGCACTTGAAAGATGACTCCttcaaaaagatgaaaaatcttaaaattcttatagttagaaaaggacaattttatggaagccctcaacatcttccaaataatttaaggttgcttgattggatggaatatccttcatcatctttaccatctTCTTTTCATCCAAAGAAACTTGTTCTACTTAACTTGTCGCGTAGTCGCTGTACGATGCAAGAACCATTCAAGCATTTGGATTGTTTGACTTCTAtggatttgagtcattgcgaattcttaactaagctacctgacacttctggtgttccaaatttaacagaactaaatcttgaccattgtacaaatctagaagaagttcacgactctgttggattccttgataaactcattgagttgagagcttatgggtgcactaaacttaaggttttgccaaattccatcaaattgacatcattgaaaagtctaattctcaattggtgttcaagtcttaaaaaattcccaacaattttggataaaatggataatctcatatctatttcaattgaaggaactagtattgaagaattgcctccttccattggaaatcttgttgctcttcaagaattaagcatgacatcttgcttgagtctcaagcaacttccagacaacattgatatattgcataatcttaaaaaccttgatattgaaggttgtccacaactaagaaattttttgacaaaatttagagaattagaacaatctaaccttacctatggtaatgttcaatcacttaatctagaagattgtgatcttatagatgaagatattcccataattttcaagtgtttcccaaacttagtatcattagtcctttcaggaaataattttgtaactcttccaagatgcatacaagaatattcttccttgcaattacttcacattgacaattgcaaacaactccaagaaatttcatgcattcctcccaatttacaattcattaatgcaagaaattgcgtatcattgactttggagtcgtcaaacttgttactaagccagGAAATATTTGAAGCATTTCAGTTACAAGTTATGGTTCCTGGAAAAAGGATTCCAGAATGGTTTGACCATTACACCAAAGGAGAATATATGACCTTTTGGGTGCAAAACCAATTTCCAGAAATTATTTTATGCTTTGTTCTTGAAATAGAGAGTGAAATGAAGAAGAGTTTCGCTTGCGAAATTCGGTTCTACATTAACAGTGAGGAAGTTTATGAATTGGAAATTCCAATTTCTTTTTCATCATTGGTGACAGATCATGTATGGTTGTATGATTTGAGGACTAGTCCATCTATTCAATGGAATGATCTTAAATCATATTTAGTTGATGATTGGAATCAAATTGAAATTTCTTGTGAGAAAATAATTGATCCATCAAATTTGACTATAAGTTGGTGTGGAATTCATGTATGTAGTAGGCAAGAAGCTAGCATGAAGGATATATTATTTGAAGATCCTGATCTTGATTTTGATTCAAGCAAAGAAAATGTGAAGATTGATGATGATTTGGATAAAAACAATGAAGAAAGTATAAAGTCAATTGAAGATTTCCAAAAGAATTTAGAAGGTTGTGAAATACTAGATAGGAAAATAGAGAACTTGGAAGATTCTAGTATTGTTGCATGCCACAATGACATGGATCATAATGAAGATAATATTTTAATGCATTCTAAAACATTGGATGGTGTTAGTAAAGATTCAATGGCTATAGTGTGTTATGGAAGCAACAATAATGTCAAAGAGTATGGATTAAACATGGTAGTTGCTGATCATCAATCAAAAGCTCAGCAAAAAGCCAAAGTCATAAATTTTATACAGACACCAAATGCTATAGAAGAAGCATTTTATGCTAATCTTGATGATGAAGAAATGGAATCATTTTATGCTATTCTTGATGCTGAGACTTCACATTCCAATGAAAAAGAAGTGTTTTCTGAATTCTCCAAAATGCCAAGTGAAAAGACCAAGAAAGCTTTGAAGACACTTAAAGACTTTCTCAACATTGATTTTTCTGTTCTTTTAAGGCCTAGTGAGTACAATACCATGAAGGATACATTAGATTACCTCACAAATTTACCTGTAGAAGAAGGGATATCTATTGAAATAAGATCATTGGTTATAGAAGTTTCAAAACAGTTCAATCATTGGAGTTATGATTACAAATATGAAAACAAGAAGATAGAGTATACAGAAGCCAAATTGTTGAAAGTTGATGAATTGGAAGAGGGTCTTGAAGCTAACAAGACCCTTTTTAGAGAAGTTAAGTATTTGGAAAGTGATTTGAGTAATGAGTTAGTTTATTTGGAAGAAAGGAAAAAAGAGTTAGAAGAACAAATAAGTGTTGTTAAAGCTAACATATGTGCTTCACAAGGTGCAAAGAATATGGCTATTCATACAAAGAAAGAAATATTTGAAAAAGGAAAGATTCTAAAAGTTCAAAGAGATGAGTTAAGGGAAGAAGTAGATAGTTTGAGAGATGAGAAAGAATTGGCTAAAAAAATTCAACAAAATATAAGAGATGAATGGTCAAAGCTGGGTGAGAAATTTAGTAATAGTATAAAGCATGAAAAGTGA 4215 0.1412 MKLHEWSYDVFLSFRGEDTRTSFTGSLYHGLHQKGINVFIDDEKLRRGEQISPSLLTAIEQSRISIIVFSQNYASSTWCLDELVKILECCKTKGQLVWPVFYHVDPSFVRHQTGSFGTAMAKHEVTFKGDVEKLRKWKRALFDAANLSGWSLEKGYEFELILRIIEEVSNELNQTLLHIAEHPVGLETRISEVKSLLNNESCEDICFIGIHGHGGIGKTTIARALYNSIANQFEVTSFISDIRESSTQHHGLVQLQESLLYETVGDKNTKLGNVNKGIPIIKKRLCCKKVLLILDDVDKLEQLEALAGGRDWFGSGSKIIITTRDKQLLASHQVDKTYEVKKLNHEEAFELFTWNAFKSKAPIGGYMEISNNVVSYAEGLPLALKVMGSNLFGKSVEEWKSALEKYEKIPSKEVQNVLRVTYDNLEENEREIFLDIACFFKGETMEYVEKTLQACGFYPKFGISVLIDKSLVSVDEYNRLKMHDLIQDMGREVVREVSPLEPGKRSRLWYHEDVIEVLTENSGTYRVQGMMVDLPDEYMVHLKDDSFKKMKNLKILIVRKGQFYGSPQHLPNNLRLLDWMEYPSSSLPSSFHPKKLVLLNLSRSRCTMQEPFKHLDCLTSMDLSHCEFLTKLPDTSGVPNLTELNLDHCTNLEEVHDSVGFLDKLIELRAYGCTKLKVLPNSIKLTSLKSLILNWCSSLKKFPTILDKMDNLISISIEGTSIEELPPSIGNLVALQELSMTSCLSLKQLPDNIDILHNLKNLDIEGCPQLRNFLTKFRELEQSNLTYGNVQSLNLEDCDLIDEDIPIIFKCFPNLVSLVLSGNNFVTLPRCIQEYSSLQLLHIDNCKQLQEISCIPPNLQFINARNCVSLTLESSNLLLSQEIFEAFQLQVMVPGKRIPEWFDHYTKGEYMTFWVQNQFPEIILCFVLEIESEMKKSFACEIRFYINSEEVYELEIPISFSSLVTDHVWLYDLRTSPSIQWNDLKSYLVDDWNQIEISCEKIIDPSNLTISWCGIHVCSRQEASMKDILFEDPDLDFDSSKENVKIDDDLDKNNEESIKSIEDFQKNLEGCEILDRKIENLEDSSIVACHNDMDHNEDNILMHSKTLDGVSKDSMAIVCYGSNNNVKEYGLNMVVADHQSKAQQKAKVINFIQTPNAIEEAFYANLDDEEMESFYAILDAETSHSNEKEVFSEFSKMPSEKTKKALKTLKDFLNIDFSVLLRPSEYNTMKDTLDYLTNLPVEEGISIEIRSLVIEVSKQFNHWSYDYKYENKKIEYTEAKLLKVDELEEGLEANKTLFREVKYLESDLSNELVYLEERKKELEEQISVVKANICASQGAKNMAIHTKKEIFEKGKILKVQRDELREEVDSLRDEKELAKKIQQNIRDEWSKLGEKFSNSIKHEK 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00229 1404 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Car05g00229 1404 Coils Coil 1354 1388 - -
Car05g00229 1404 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 1073 - -
Car05g00229 1404 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1220 1378 - -
Car05g00229 1404 Gene3D - 342 426 IPR042197 -
Car05g00229 1404 Gene3D - 172 338 IPR027417 -
Car05g00229 1404 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1220 1378 IPR044974 GO:0006952
Car05g00229 1404 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 1073 IPR044974 GO:0006952
Car05g00229 1404 SUPERFAMILY L domain-like 532 876 - -
Car05g00229 1404 Pfam TIR domain 8 176 IPR000157 GO:0007165
Car05g00229 1404 Gene3D Ribonuclease Inhibitor 532 704 IPR032675 -
Car05g00229 1404 Gene3D Ribonuclease Inhibitor 706 886 IPR032675 -
Car05g00229 1404 Coils Coil 1305 1332 - -
Car05g00229 1404 PRINTS Disease resistance protein signature 207 222 - -
Car05g00229 1404 PRINTS Disease resistance protein signature 284 298 - -
Car05g00229 1404 PRINTS Disease resistance protein signature 377 391 - -
Car05g00229 1404 PRINTS Disease resistance protein signature 613 629 - -
Car05g00229 1404 Pfam NB-ARC domain 187 422 IPR002182 GO:0043531
Car05g00229 1404 Gene3D - 2 171 IPR035897 -
Car05g00229 1404 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Car05g00229 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 436 IPR027417 -
Car05g00229 1404 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 150 IPR035897 -
Car05g00229 1404 SMART till_3 7 147 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00229 Car-Chr5 5528172 5534024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00229 8 781 WRKY Transcription Factor Family AT4G12020 31.390 1.06e-90 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00229 - - ccaj:109810288 2088.15