Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00227 ATGAATCTTGAGACAAAGCTTACATTAATCTATGCTTCAAAGCCACAATATTCACTAGAAAATTACTACATGAAAAATCATGAGAATCCTATTGGTGGATTTCCTAATTCATCTCAAGGATTCATGCAAGATTTTAATCACATTAATAAGTTTAATGTGAATGGGTCATTTTTCAATCCTGTTTCTGGGGTCCAAACAACAAATTTTGATCCTTGTGATAATTTTACATACGATTTCAAGCCTAATTTGATGGAGAATAATGGTAATGGTAATGCTTATGTTATGGACAATTTTTTATATGGAGGCTATGGTTTGAACATTTCTCAGAGAAATAATAATAAAGTGGAAATGATGGTTACAAACCAACAAAATTATTTTCCTTTTAATATTAATTCTCAAGGAACCAAGCCTTTGAATTTTGTTGTACCCGATCAAATCTCATGCATATCACCAATGAATTATTACAAAAGAATTGGCATGAACAGAAACAATGCTAGAAAGACAGAAAAAGTTCAGAAGTCCAACATAGTCAAAGGTCAATGGACAGTACAAGAAGATAGGTTGTTGATTCAGCTGGTTGAAAAATATGGATTGAGAAAGTGGTCTCATATTGCTCAGCTATTCCCAGGTAGAATAGGAAAACAATGCAGAGAGAGATGGCATAATCATCTAAGGCCTGACATTAAGAAGGATATATGGAGTGAGGAAGAGGACAAAATATTGATAAAAGCTCATTCAGAGATAGGAAACAAATGGGCAGAGATAGCTAAAATATTAGCTGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACCAAAAGAAGACAATATTCAAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGAACTCTTCTACAAGAATATATCAAAAGCTTGAACCTTGACAAAAACCCTCCAAAAGATTATAGAAGAAAACCTACCAATAATGCTACTTTGTTCAAAAACAAAACCAGTCAAATCACTCTGTCTCAAACACCTTATCAACAATTTTGTCCCAATCAGTGTTTGGTACCAAGTTCTGATTTTGATGATGTCCAAGATTTTGAGAGTTTGTTTCAAGATGGGTGTAGTATTGATTCTCTGCTAGAGGATATGAAATGTGGATCAAGTGTTAATCTTGTTGATGAGACAGATATTATGGGATCAGTTATGGTTGGAGTTGAAGTTAAGAAGGAGATGGTGTCACTGCTCAATTAA 1224 0.3374 MNLETKLTLIYASKPQYSLENYYMKNHENPIGGFPNSSQGFMQDFNHINKFNVNGSFFNPVSGVQTTNFDPCDNFTYDFKPNLMENNGNGNAYVMDNFLYGGYGLNISQRNNNKVEMMVTNQQNYFPFNINSQGTKPLNFVVPDQISCISPMNYYKRIGMNRNNARKTEKVQKSNIVKGQWTVQEDRLLIQLVEKYGLRKWSHIAQLFPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKILIKAHSEIGNKWAEIAKILAGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPKDYRRKPTNNATLFKNKTSQITLSQTPYQQFCPNQCLVPSSDFDDVQDFESLFQDGCSIDSLLEDMKCGSSVNLVDETDIMGSVMVGVEVKKEMVSLLN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00227 407 SMART sant 177 226 IPR001005 -
Car05g00227 407 SMART sant 229 277 IPR001005 -
Car05g00227 407 CDD SANT 233 275 IPR001005 -
Car05g00227 407 ProSiteProfiles Myb-like domain profile. 225 275 IPR001005 -
Car05g00227 407 Gene3D - 177 230 - -
Car05g00227 407 SUPERFAMILY Homeodomain-like 175 271 IPR009057 -
Car05g00227 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 279 IPR017930 -
Car05g00227 407 PANTHER MYB PROTEIN-RELATED 95 304 - -
Car05g00227 407 Gene3D - 232 289 - -
Car05g00227 407 PANTHER BNAC07G50190D PROTEIN 95 304 - -
Car05g00227 407 CDD SANT 181 224 IPR001005 -
Car05g00227 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 228 IPR017930 -
Car05g00227 407 ProSiteProfiles Myb-like domain profile. 173 224 IPR001005 -
Car05g00227 407 Pfam Myb-like DNA-binding domain 178 224 IPR001005 -
Car05g00227 407 Pfam Myb-like DNA-binding domain 233 272 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00227 Car-Chr5 5404600 5406198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00227 60 374 MYB Transcription Factor Family AT4G18770 48.433 3.36e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g00227 Myb_DNA-binding 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00227 K09422 - gmx:100781456 465.692