Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00216 ATGGCATCCGAATCCTCAAGCATATCTGCCACTTCACAAGATGAGGGTGATTCTTCCCAAACAGAAAAAGTTGAGGATACGAAGGAGAACAAAGACTTGAAGCCTCAACAAGATCAACCCTCAAATTCCAATCAAAACAAGCATCTTGATTTTGTGAAGTTATCGAAAGACGATTCGGTTCACGTGTCGAACGTGCAAGAGCACAACTTTTTTAACCCTATTCGAGTTGGTTCATCATCTTGTTGGCCTAATAACAACGATAGAGGAGAAGCTGAGAACGACGACAACGACAACGATGAAGAGAAGAATTCAGATTCAAAGACTTTCTCATGTTATTTTTGTAAGAGACAATTTTCTTCTTCGCAAGCTTTAGGAGGACACCAGAACGCTCATAAGGCAGAACGTGCTTTAGAAAAGAAACGTAAACAAAGGTACGAAGGTGGTGCTTTAGGTTTAGGGCAACCTCCTCTTTTTAACCCTTATTTTAGTTATCCAAGTACTCTTTTTACACCTTATAATTATAATTATAGGGGACTTGGGGTTAGAATGGATTCCATGATTCAAAAACCACCTTATAATAATAACCCTAGGGTTCCTTCACATAATTTTGGCTATGGTCATGGTACTTTGTGCTTGCAAGAGAT 644 0.3913 MASESSSISATSQDEGDSSQTEKVEDTKENKDLKPQQDQPSNSNQNKHLDFVKLSKDDSVHVSNVQEHNFFNPIRVGSSSCWPNNNDRGEAENDDNDNDEEKNSDSKTFSCYFCKRQFSSSQALGGHQNAHKAERALEKKRKQRYEGGALGLGQPPLFNPYFSYPSTLFTPYNYNYRGLGVRMDSMIQKPPYNNNPRVPSHNFGYGHGTLCLQE 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00216 214 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Car05g00216 214 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 2 194 - -
Car05g00216 214 SUPERFAMILY beta-beta-alpha zinc fingers 105 137 IPR036236 -
Car05g00216 214 MobiDBLite consensus disorder prediction 18 35 - -
Car05g00216 214 MobiDBLite consensus disorder prediction 76 105 - -
Car05g00216 214 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Car05g00216 214 Gene3D Classic Zinc Finger 92 149 - -
Car05g00216 214 MobiDBLite consensus disorder prediction 1 49 - -
Car05g00216 214 MobiDBLite consensus disorder prediction 1 17 - -
Car05g00216 214 PANTHER ZINC FINGER PROTEIN JAGGED 2 194 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00216 Car-Chr5 5245986 5246629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00216 98 189 C2H2 Transcription Factor Family AT5G25160 44.565 1.58e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00216 - - mtr:MTR_3g011970 234.958