Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00205 ATGGGTTTTGAACCATTGATTTGGTACTGCAAACCAGAACCAAATAGTATTTGGGATAAAATAGTGGACAGTGCTTTTGGGTCATATACACCTTGTGCAATCAACACTCTTGTTAACTCTACTTCAAATTTGGTTCTTATGGGTTTGTGCTTATATAGAATATGGCTTATCAGTTGCAATGTTAAAGCTCAAAGGTTTTGTTTGAAATCAAATTACTATAATTATGTTCTTGGAATGTTGGCTTGTTATTGTGCTGTTCAGCCTTTGTGGAGATTGGTGATTGGAGATTCAGCTTTCAATCTCAATGAGGAAACTAGTTTTGCTCCTTTTGAGATAACTGCTCTGGTCACTGAATCAGTTACTTGGTTCTCAATGATAATTCTCCTCCTCTTGGAAACCAAGATTTATGTTAGGCAATTTAGGTGGTTAGTGAGGTTTGGAGTTATTTATGTTTTGGTGGGAGATATTGTTATGGTTGACCTTCTTCTTTCAGTCAAAGATTACTCTAGCAGATCTGCTCTACTTCTGTATATTAGCACTGTTATCAGCCAGGTGCTGTTTGGAACCTTACTTCTAGTTTACATTCCTAATTTGGTTCCATATTCTCACCATACAACAATCCAAGCTGAAATACCTGAAAATGCTGAATATGAACCACTTTGTGGAGATGATCAAGTTTGCCCTGAGATGCGCGCCAATTTTTTATCTAGATTAAGTTTTGGATGGATAACTCCACTCATGAAACAAGGCTACAGAAAACCCATCACTGAAAAGGATGTTTGGAAACTAGACAAATGGGATCAAACAGAGACATTAAATGAAAAGTTCCAATGGTGTTGGATGTCAGAATTTCAAAGCTCTAACCCTCGGCTTTTAAGAGCATTAAACAACAGCCTAGGAAAAAGGTTTTGGTGGGGAGGCATCTATAAGATTGGTAATGATCTTTCTCAATTTGTGGGGCCTATTTTGCTGAACCATCTCTTAGATTCAATGCAAAATGGAGATCCGTCTTGGATCGGTTACATCTTCGCCTTCTCCATATTTGTTGGAGTGTCACTTGGTGTTCTATGTGAGGCACAGTATTTCCAGAATGTTATGCGTGTCGGTTTTCGTCTTAGATCAACATTGGTGGCGGCTATATTCAGAAAATCTTTGAGGCTAACTCATGAAAGTAGAAAGAAGTTCTCATCTGGGAAGCTTATGAATATGATAACAACAGATGCCAATGCATTACAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGCATCATCATAGCTATGGTTCTCTTATACCAACAGCTTGGTGTTGCTTCAATTATTGGATCACTAATGCTAGTTCTCATTATACCACTGCAGACATTTGTGATTAGCAAAATGCGAAAACTGACAAAGGAAGGACTACAACAGACAGACAAAAGGGTTGGTCTCATGAATGAAATTCTAGCTGCCATGGATTCAGTGAAATGTTATGCGTGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATTCGACATGAGGAACTATCATGGTTCCGCAAAGCACAGCTACTATATGCTCTAAACGGTTTTATACTGAACAGCATCCCAGTTCTTGTGACAGTAATTTCCTTTGGAGTGTTTACTTTACTTGGTGGAGAATTGACACCTGCAAGAGCATTCACCTCATTGTCACTGTTTTCAGTTTTGCGCTTTCCTTTAAATATGCTTCCAAATTTACTAAGTCAGGTAGCAAATGCAATTGTCTCATTGCAACGTTTGGAGGAACTTTTTTCGGCCGAGGAACGGAATTTAAAACAAAATCCACCTATTGTTCCAGAACTTCCAGTCATCTCAATAAATAATGGATACTTTTCATGGGATCCTAAGGAAGAGAAGGCCACATTATCAAATATCAATGTTGAAATACCAGTTGGAAGCTTAGTTGCAATCATTGGAGGTACTGGAGAAGGGAAAACATCACTTATTTCAGCAATGCTCGGAGAGCTACCTCTTGTATCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAAATTTCATGGATTTACAATGCTACAGTTCGTGAAAATATATTATTTGGATCGAAATTCGATCATGGACGGTATTGGAAGGCCATCGATGTAACTTCTTTGGAGCATGATCTCAACTTTTTACCTGGACGTGATTTTACGGAGATCGGAGAAAGAGGAGTGAATATTAGTGGTGGACAAAAGCAAAGAGTTTCTTTAGCTAGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCTTTAAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAAGAACTGTATAAAGGAAGGGCTGCATGGAAAAACCAGGGTTCTTGTCACCAACCAGCTTCATTTTCTCCCTCAGGTGGACAGAATTATTCTTGTTGGTGAAGGCATGATTAAGGAGCAAGGAACGTTTGAGGAGTTGTCAAAATGCGGGCCTCTATTTCAGAAACTAATGGAAAATGCAGGAAAAATGGAACAAGAAGTAGAAAAAAACAAAGATAGAGATAGTCATGACAACAAGACTGATGTCTTACCTTTGAATAATGAGGCAATTATAGAGTTACCAAATGATACGAACTATGAGAAGAAGGGAAAATTGCGAAAATCGGTACTTGTTAAGAAAGAAGAGCGGGAGACAGGCGTGGTTAGCTGGAAAGTTTTAACAAGGTACAGATCTGCTTTAGGAGGACTGTGGGTAGTTTCTATACTTTTTGCATGCTACACATTAACAGAAGCTCTTCGAATTTCGAGTAGCACATGGTTAAGTGTGTGGACATCACAAGATTCCACTGCAGCATCTCAAGCAGGATATTTTCTTTTCATTTATGCACTTTTTTCATTTGGACAGGTATCTGTGGCACTTGCAAACTCTTATTGGTTGATCATTTCAAGTCTCCGTGCTGCCAAAAGATTGCATGATGCGATGCTAGATAAAATTCTACGTGCTCCAATGCTGTTCTTCCAGACTAATCCCGTCGGCCGCATAATTAATAGATTTGCGAAAGACACAGGAGACATAGATACCAATGTTTTTAATTTGATGAATATGTTTCTTGGGCAAGTCTGGCAGCTACTTTCAACATTTGTTCTTATAGGCACTGTGAGCACCATATCGTTGTGGGCCATAATGCCACTTCTGATATTTTTCTATGCTGCTTATATATACTACCAGAGCACAGCTCGAGAAGTAAAGCGCATGGATTCCATTACAAGGTCTCCTGTTTATGCACATTTTGGGGAATCGTTGAATGGTTTGTCAAGCATTCGCGCTTACAAAGCATACGACAGGATGTCAAACATCAATGGACAATTCATGGATAACAATATAAGATTCACTCTTGTGAATATTAGTTCGAACCGTTGGTTGACAATACGATTAGAAAGCTTAGGAGGCCTCATGATTTGGTGGATAGCAACCTTTGCTGTCTTACAAAATGCAAGATCAGAAAACCCTGCAATGATGGCATCTACAATGGGTCTACTTCTAAGTTATACATTGAACATAACAAATCTTTTGAGTGGTGTCCTAAGACAAGCAAGTAGAGCTGAAAATAGTTTGAATTCAGTCGAACGCGTTGACACATATATAAATTTAGAAACTGAGGGTCTTGGTATAATTGAGACAAACCGTCCACCACCCGGATGGCCAATGTCAGGATCAATTGAGTTTGAGAATGTTGTTCTTAGTTATAGGCCTGAACTTCCTCCGGTCTTGCACGGATTGTCTTTTACGGTACCTTCGACTGAGAAGATAGGTGTAGTCGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCATTATTTCGAATTGTTGAACTACAAAGTGGAAGAATCATTATTGATGGATGTGATATTTCTACGTTTGGACTAGCTGATTTGAGAAGAGTTCTTACTATCATACCTCAATCGCCAGTTCTTTTCTCCGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCACACTTGAAGGATGTAATAAGAAGAAATTCATTTGGTCTAGATGCTCAGGTTTCTGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAGCTATTAAGTCTAGCTAGAGCATTGCTAAGAAGATCAAAGGTTCTTGTCTTGGATGAAGCTACGGCTGCTGTTGATGTTAGAACAGATGCTCTTATACAGAAAACTATCAGACAAGAATTTCATTCATGCACAATGCTCATCATTGCTCACAGATTGAATACAATCATCGACTGCAATCGGATTCTGTTGCTAGATGCTGGCAAGGTTCTTGAATACAGTTCACCTGAGAAACTCTTACAAAATGAAGAAACTGCATTCTACAAGATGGTACAAAGCACTGGACCTGCAAATGCTGAGTATTTATGTAGCTTAGTATTTGGAAGGACAGAGAACAATTCAAATGAATATAACAACAAGGAGCTGGAAATCCATATGAAACAGTTAGCATCTATCAATTGGAATAGTGCAACTCAATTTGCAATAGCTACTACTCTATCTTCTTTACAAAATCACCTTCAAAGTCCAAATAATAAAGACAAGAAAGACATTCTTAATAGAACAAAGGATGCAGTAACAACACTTCAGGAAGTTCTTGAAGGAAAGCATGATGAAAGTATAGAAGAGACATTGACAAAATATCATGTTCCTACAGATAGATGGTGGTCTACTCTCTATAAAGTTATTGAAGGTCTTGGTTTCTTGATCAGGTTACCTCAGGATAACTTTCAACAGCTAGCACCTGATTTTGAAGGGAGATCCTTTGACTAA 4857 0.3871 MGFEPLIWYCKPEPNSIWDKIVDSAFGSYTPCAINTLVNSTSNLVLMGLCLYRIWLISCNVKAQRFCLKSNYYNYVLGMLACYCAVQPLWRLVIGDSAFNLNEETSFAPFEITALVTESVTWFSMIILLLLETKIYVRQFRWLVRFGVIYVLVGDIVMVDLLLSVKDYSSRSALLLYISTVISQVLFGTLLLVYIPNLVPYSHHTTIQAEIPENAEYEPLCGDDQVCPEMRANFLSRLSFGWITPLMKQGYRKPITEKDVWKLDKWDQTETLNEKFQWCWMSEFQSSNPRLLRALNNSLGKRFWWGGIYKIGNDLSQFVGPILLNHLLDSMQNGDPSWIGYIFAFSIFVGVSLGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHESRKKFSSGKLMNMITTDANALQQICQQLHGLWSAPFRIIIAMVLLYQQLGVASIIGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDSVKCYAWETSFQSRIQSIRHEELSWFRKAQLLYALNGFILNSIPVLVTVISFGVFTLLGGELTPARAFTSLSLFSVLRFPLNMLPNLLSQVANAIVSLQRLEELFSAEERNLKQNPPIVPELPVISINNGYFSWDPKEEKATLSNINVEIPVGSLVAIIGGTGEGKTSLISAMLGELPLVSDGNATIRGTVAYVPQISWIYNATVRENILFGSKFDHGRYWKAIDVTSLEHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFKNCIKEGLHGKTRVLVTNQLHFLPQVDRIILVGEGMIKEQGTFEELSKCGPLFQKLMENAGKMEQEVEKNKDRDSHDNKTDVLPLNNEAIIELPNDTNYEKKGKLRKSVLVKKEERETGVVSWKVLTRYRSALGGLWVVSILFACYTLTEALRISSSTWLSVWTSQDSTAASQAGYFLFIYALFSFGQVSVALANSYWLIISSLRAAKRLHDAMLDKILRAPMLFFQTNPVGRIINRFAKDTGDIDTNVFNLMNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMSNINGQFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWWIATFAVLQNARSENPAMMASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEGLGIIETNRPPPGWPMSGSIEFENVVLSYRPELPPVLHGLSFTVPSTEKIGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGCDISTFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFHSCTMLIIAHRLNTIIDCNRILLLDAGKVLEYSSPEKLLQNEETAFYKMVQSTGPANAEYLCSLVFGRTENNSNEYNNKELEIHMKQLASINWNSATQFAIATTLSSLQNHLQSPNNKDKKDILNRTKDAVTTLQEVLEGKHDESIEETLTKYHVPTDRWWSTLYKVIEGLGFLIRLPQDNFQQLAPDFEGRSFD 1618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00205 1618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1474 IPR003439 GO:0005524
Car05g00205 1618 SUPERFAMILY ABC transporter transmembrane region 903 1220 IPR036640 GO:0005524|GO:0016021
Car05g00205 1618 Gene3D ABC transporter type 1, transmembrane domain 881 1220 IPR036640 GO:0005524|GO:0016021
Car05g00205 1618 SMART AAA_5 1266 1445 IPR003593 -
Car05g00205 1618 SMART AAA_5 642 822 IPR003593 -
Car05g00205 1618 CDD ABCC_MRP_domain1 615 815 - -
Car05g00205 1618 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Car05g00205 1618 Gene3D - 594 864 IPR027417 -
Car05g00205 1618 CDD ABCC_MRP_domain2 1238 1458 - -
Car05g00205 1618 SUPERFAMILY ABC transporter transmembrane region 289 599 IPR036640 GO:0005524|GO:0016021
Car05g00205 1618 ProSitePatterns ABC transporters family signature. 1377 1391 IPR017871 GO:0005524
Car05g00205 1618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1230 1473 IPR027417 -
Car05g00205 1618 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Car05g00205 1618 Pfam ABC transporter 1257 1405 IPR003439 GO:0005524
Car05g00205 1618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 838 IPR027417 -
Car05g00205 1618 Gene3D - 1224 1476 IPR027417 -
Car05g00205 1618 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g00205 1618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Car05g00205 1618 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1495 - -
Car05g00205 1618 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1203 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g00205 1618 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Car05g00205 1618 Gene3D ABC transporter type 1, transmembrane domain 290 593 IPR036640 GO:0005524|GO:0016021
Car05g00205 1618 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 38 1495 - -
Car05g00205 1618 Pfam ABC transporter transmembrane region 307 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g00205 1618 Pfam ABC transporter transmembrane region 921 1176 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g00205 1618 Coils Coil 833 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00205 Car-Chr5 4989000 5006209 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00205 560 831 Calmodulin-binding Proteins AT2G36910 25.685 1.90e-22 103