Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00199 ATGATTAAGGAGCAAGGAACGTTCGAGGAGTTGTCGAAATGTGGGCCTCTATTTCAGAAACTAATGGAAAATGCGGGGAAAATGGAACAAGAAGTAGATAGTAACAAAGATAAAGATAGTCATTACAACAAGGCTGATGTCTTACCTTTGGATAATGAGGCAATTGTAGAGTTACCAAATGATACAAACTATGAGAAGGGAAAATTGCGAAAATCGGTACTTGTTAAGAAAGAAGAGCGGGAGACAGGCGTGGTTAGCTTGAAAGTTTTAAGGAGTTACACATCTGCTGTGGGAGGACTCTGGGTAGTTTCTATACTTTTTGTTTGCTACACATTAACAGAAGCTCTTCGAATTTCGAGTAGCACATGGTTAAGTGTGTGGACATCTCAAGATTCCACTGCAGCTTCTCAAGCAGGATCTTTTCTTTTCATTTATGCACTTTTTTCATTTGGACAGGTATCTGTGGCACTTGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCGTGCTGCCAAAAGATTGCACGATGCGATGCTAGATAAAATTCTACGTGCTCCAATGGTGTTCTTCCAGACTAATCCCGTTGGCCGCATAATTAATAGATTTGCAAAAGACACGGGAGACATAGATATCAATGTTTTTAATTTGGGGAATATGTTTCTTGGGCAAATCTGGCAACTACTTTCGACATTTGTTCTTATAGGCACTGTCAGCACCATATCCTTGTGGGCTATAATGCCACTTCTGATATTTTTCTATGCTGCTTATATATTCTACCAGAGCACTGCTCGAGAAGTGAAGCGCATGGATTCCATTACAAGATCCCCTGTTTATGCACATTTTGGAGAATCATTGAATGGTTTGTCAAGTATTCGCGCTTACAAAGCGTACGACAGGATTTCAAACGTCAATGGAAAATTCATGGATAACAATATCAAATTCACTCTTGTGAATATTAGTTCGACCCGTTGGCTGAAAATACGGTTAGAAACCTTAGGAGGCCTAATGACTTGGTTGATAGCAACATTTGCTGTCTTGCAAAATGCAAGATCAGAAAACCCTGCGATGATTGCATCTACAATGGGATTACTTCTCAGTTATACATTAAACATAACAAGTCTCTTGAGTGATGTCCTTGGCCAAGCAAGTAAAGCTGAAAACAGTTTGAATTCAGTCGAACGCGTTGACACATATATAAATTTAGAAACTGAGGGTCCAGGTATAATTGAGACAAACCGTCCACCACCCGGATGGCCGACATTAGGATCAATCGAGTTTGAGAATGTTGTTCTTAGTTATAGGCCTGAACTTCCTCCGGTCTTGCATGGATTGTCCTTTACAGTACCATCAACTGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCTGGAAAGTCTAGCATGCTTAATGCGTTATTCAGGATTGTGGAACTACAAAGTGGAAGGATCATTATTGATGGATGTGATATTTCTACGTTCGGACTAGCAGATTTGCGAAGAGTTCTTACTATCATACCACAGTCGCCGGTTCTTTTCTCCGGAACCGTTCGCTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACTTATGGAAAGCTTTGGAAAGGGCACACTTGAAGGATGTATTAAGAAGAAATTCATTTGGTCTAGATGCTCAGGTTTCTGAGAGAGGAGACAATTTCAGTGTTGGACAGAGACAGCTATTAAGTCTAGCTAGAGCATTGCTAAGAAGATCAAAGGTTCTTGTCTTGGATGAAGCAACTGCTTCTGTTGATGTTAGAACAGATGCTCTTATACAGAAAACTATCAGACAAGAATTTGATTCCTGCACAATGCTCATCATTGCTCACAGATTGAATACAATTATCGACTGCAACCGGATTCTGTTACTAGATGCCGGTCGGGTTCTTGAATACAGTTCACCTGAGAAACTCCTACAAAATGAAGAAACTGCATTCTACAAGATGGTACAAAGCACTGGACCTGCAAATGCTGAGTATTTATGTAGCTTAGTATTTGGAAGGATAGAGAAAAATTCAAATGTGTGA 2049 0.3987 MIKEQGTFEELSKCGPLFQKLMENAGKMEQEVDSNKDKDSHYNKADVLPLDNEAIVELPNDTNYEKGKLRKSVLVKKEERETGVVSLKVLRSYTSAVGGLWVVSILFVCYTLTEALRISSSTWLSVWTSQDSTAASQAGSFLFIYALFSFGQVSVALANSYWLIISSLRAAKRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDINVFNLGNMFLGQIWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIFYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRISNVNGKFMDNNIKFTLVNISSTRWLKIRLETLGGLMTWLIATFAVLQNARSENPAMIASTMGLLLSYTLNITSLLSDVLGQASKAENSLNSVERVDTYINLETEGPGIIETNRPPPGWPTLGSIEFENVVLSYRPELPPVLHGLSFTVPSTEKIGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGCDISTFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWKALERAHLKDVLRRNSFGLDAQVSERGDNFSVGQRQLLSLARALLRRSKVLVLDEATASVDVRTDALIQKTIRQEFDSCTMLIIAHRLNTIIDCNRILLLDAGRVLEYSSPEKLLQNEETAFYKMVQSTGPANAEYLCSLVFGRIEKNSNV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00199 682 Pfam ABC transporter transmembrane region 104 366 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g00199 682 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 676 - -
Car05g00199 682 Gene3D - 408 660 IPR027417 -
Car05g00199 682 Pfam ABC transporter 441 589 IPR003439 GO:0005524
Car05g00199 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 657 IPR027417 -
Car05g00199 682 SUPERFAMILY ABC transporter transmembrane region 101 404 IPR036640 GO:0005524|GO:0016021
Car05g00199 682 CDD ABCC_MRP_domain2 422 642 - -
Car05g00199 682 Gene3D ABC transporter type 1, transmembrane domain 65 404 IPR036640 GO:0005524|GO:0016021
Car05g00199 682 ProSitePatterns ABC transporters family signature. 561 575 IPR017871 GO:0005524
Car05g00199 682 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 387 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g00199 682 Coils Coil 18 38 - -
Car05g00199 682 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 1 676 - -
Car05g00199 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 658 IPR003439 GO:0005524
Car05g00199 682 SMART AAA_5 450 629 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00199 Car-Chr5 4778735 4784266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00199 422 658 Calmodulin-binding Proteins AT2G36910 33.195 1.64e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00199 - K05665 cam:101504903 1324.69