Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00198 ATGGGTACGGAGAGGAAGAGGAAGATGAGTTTATTCGACGTCGTGGACGACTCTGCAGCTAAGATTAACAAGGGTACTGTTGAAATCATAACCCCTGTTGAACTCATCAAGAAGGGAGACAAGTATTTACCCGAGGTTCTTGATCTCACTGAGGATGCTCTCATTGAGAAGTTTTCTATTGGTGTCTCAGTGGCGACTTCACTTTCGTTGGCCATCTCATACCTAACACTTGCTGCTGCTCATCACATGTTTGTCAAGGAGTTCCTAAAGGACCCAAGAAAGTTTTctgcagctgcagttgctgccccagctgctgatgctggtactgcctctgctgctgctgcCAAGGAGGAGGAGAAGAAGGATGAATTGATGGTATTTGGAGAATATGGCACCATTACTAGTGATGTTTTGATGAGAGATGCAGATGGTAGATCAAGGTGTTTTGGTTTTGTCAATTTCGAAAATCCAAACAATACTGTTAATGATGTGGAGGCATTGAATGGGTGTCCTGATTCTGATTCTGGGAATAGTGGTCCCACAGATTGTGGTGTCCTTGGAAAGTGGACTGTGGGATCAGATTTTTGGTGGAGAAAACTCTCCAGCCTTTGCCGTGGCAGCTATTGTAGCCCATATGAGTGGGCTCTTAGCTGA 654 0.4006 MGTERKRKMSLFDVVDDSAAKINKGTVEIITPVELIKKGDKYLPEVLDLTEDALIEKFSIGVSVATSLSLAISYLTLAAAHHMFVKEFLKDPRKFSAAAVAAPAADAGTASAAAAKEEEKKDELMVFGEYGTITSDVLMRDADGRSRCFGFVNFENPNNTVNDVEALNGCPDSDSGNSGPTDCGVLGKWTVGSDFWWRKLSSLCRGSYCSPYEWALS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00198 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 169 IPR000504 GO:0003723
Car05g00198 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 169 IPR000504 GO:0003723
Car05g00198 217 Gene3D - 109 174 IPR012677 -
Car05g00198 217 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 9 41 - -
Car05g00198 217 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 43 85 - -
Car05g00198 217 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 85 123 - -
Car05g00198 217 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-LIKE 43 85 - -
Car05g00198 217 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-LIKE 9 41 - -
Car05g00198 217 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-LIKE 85 123 - -
Car05g00198 217 SUPERFAMILY RNA-binding domain, RBD 126 170 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00198 Car-Chr5 4764589 4765731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00198 8 105 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 45.752 1.57e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00198 K02941 - egr:104454381 109.768