Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00186 atgtcgagcaagaagaaaCGCAAACAAAGCGATAGCGATGAATATGACGACATTTTTTTCTACCGATACTGTGCTTCATCGTCAAACAATAAccaagctcagatccaagcccatgtccaagcccaacccaaatcaaaCAACAGAGAATCAAGCGTTGGAGGAACAGGAGAACCATTAGCACCATCAAAATCAACCTTATACGTTTCAAATATAGATTACTCGCTAACAAACTCCGACCTACACACTCTCTTTTCAACTTTCGGTAAAATCGCCCGTGTAACCGTTCTTAAAGACCGTCACACGCGCCTCAGCCGTGGTGTTGCTTTCATCCAATTCGTTTCCCGTCACGACGCCCAACGTGCTGTAACTGAAATGAACAAAAAAATCCTTAATGGACGGACAATAACCGCCTCTATTGCTGCTGACAATGGACGCGCACCAGAGTTTATTCGCAAGCGCGTGTATAACACGGAAACTGCCTTGTGCTTCGAGTGTGGGGAACATGGTCATTTATCGTATGAGTGTCCTAGGAATCAGTTGGGATCGAGGTCGCGGCCTCAGCCTAAGAAGCCGCGTCGTGGGCTCAACTGGAACAAGGACATAgaggaggaggaagatgaagaggaagaggGTGGGGATCGGTTTGATGAAACATGGGCTTCTGTGGTGGATGATGGAGCGTGTGAGAGGTTGTTGGGTAGGAATGAGTTTAGATGA 717 0.4086 MSSKKKRKQSDSDEYDDIFFYRYCASSSNNNQAQIQAHVQAQPKSNNRESSVGGTGEPLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGKIARVTVLKDRHTRLSRGVAFIQFVSRHDAQRAVTEMNKKILNGRTITASIAADNGRAPEFIRKRVYNTETALCFECGEHGHLSYECPRNQLGSRSRPQPKKPRRGLNWNKDIEEEEDEEEEGGDRFDETWASVVDDGACERLLGRNEFR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00186 238 MobiDBLite consensus disorder prediction 38 53 - -
Car05g00186 238 ProSiteProfiles Zinc finger CCHC-type profile. 162 177 IPR001878 GO:0003676|GO:0008270
Car05g00186 238 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Car05g00186 238 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 10 234 IPR044598 GO:0000398|GO:0005689
Car05g00186 238 Pfam Zinc knuckle 162 176 IPR001878 GO:0003676|GO:0008270
Car05g00186 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Car05g00186 238 SUPERFAMILY RNA-binding domain, RBD 34 147 IPR035979 GO:0003676
Car05g00186 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 136 IPR000504 GO:0003723
Car05g00186 238 MobiDBLite consensus disorder prediction 178 216 - -
Car05g00186 238 MobiDBLite consensus disorder prediction 38 59 - -
Car05g00186 238 Gene3D - 22 152 IPR012677 -
Car05g00186 238 SMART rrm2_1 65 138 IPR003954 GO:0003676
Car05g00186 238 SUPERFAMILY Retrovirus zinc finger-like domains 152 178 IPR036875 GO:0003676|GO:0008270
Car05g00186 238 SMART rrm1_1 65 138 IPR000504 GO:0003723
Car05g00186 238 CDD RRM_ZCRB1 63 140 IPR034219 -
Car05g00186 238 Gene3D - 153 194 - -
Car05g00186 238 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 10 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00186 Car-Chr5 4544584 4547723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00186 64 140 Eukaryotic Initiation Factors Gene Family AT1G49760 37.662 1.34e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00186 K13154 - gmx:100814914 290.812