Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00139 ATGGCTCTGAAGTCTATAGCGATTTTGGCGGTTTCTACGGTGTTAAGTTTTGTAGGTCTTCAGTTTTGGACAGATTTGTCACTAGATAAACTTAAATCAGATGGACTAATTGGCTGGAATTCAGTTCACTTGGACAATGTCGACGATGGTAATGAGTTACCTTTGGGTTTGTATACCACCATAGGGTTACTGACGAATTGCATGATCAATGTATTTGTCCTTCTCAATCTTTGTCTCAAGGCTATGTTTTTCGCAGAGTTGTATCCTTCTGAAACTCGTAAGCTGATTGAGCGTCTTGTTAATTATGTTATTTACAAGGGGACATTTCTTCCATTGATTGTGCCACCAACACTTTATCAAGCAGGTCTTTGGTCAACATGGTTGGCTGTGCTTTGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGAGATCGATTGGAGCGGCTGAATGCATCTCCGTCAGCCACACCGTGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTCTTGGTTGATGTTCTCTGGATAAGGCTTTGTCTTGCAATATATAGAACACATGAGTCCTCTATGTTTCTGTTACTATTCTTTGAGCCTTTAAGTATTGCTTTCGAGACCCTACAGGCCCTATTGGTACATGGATTTCAGTTGCTTGACATATGGATCCATCATTCAGCTTGCAGTAGCAGTGATTTCCGAACACCTAAACTGCTTGACACATTAACCGCAGGTTCTTTATTGGAATGGAAGGGAATTCTTATCCGGAACTTGGGATTTTTCCTTGACATGGCAACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTCGTAGATGCAGTGCTATTTCTAAATATACGTGCTTTGCTTAGTGCAATGATAAATCGCATAAAAGGCTTTACTAGGCTAAGGGTAGCTCTAGGAGCACTTCATGCAGCTCTTCCTGATGCAACAACCGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGGGAACCTATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACGTGCCGAAAGCCACTTTTTACAGGCCAGCCTGAAAATGAAACAAACACAAGTGCAGGAGTAATATCGAGTGACGAGCAACTTGCGCGTCAAATGAGTGCAGTATTTGATCGTCAAAACTCTGCTAGACAAACCATGCCTGCAGGATTGTTTCCAAATCAGACAATGAACAACGCCGAAGGTGTTTCTTGGAGgggcgcaggagtggattcaagttggttgcattcttggccaaaccagggcgtcgatggagccggtccatctactgctatcagaacagtaggtctcggaagagttcaaatgatgatGAGACATCTTGCATCTGTTGGAGAAACCTATGCTCAAACCAGCTTCGATGAAGCTTCTTGGAACGTTTGGCCTATTAATCCGTCTCAAGCTTCTGCGAGTGGTCCGAGTCCGACCGTTCCTTCTCCTGCGGGAAGATTGCCAGGAGGAAATGGTGGTTTACATATAAGGACCGCATCACGATCTGCAAATGATAATGTAGCAAATGTACTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGCGGACAAATTCTGTGACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1767 0.3962 MALKSIAILAVSTVLSFVGLQFWTDLSLDKLKSDGLIGWNSVHLDNVDDGNELPLGLYTTIGLLTNCMINVFVLLNLCLKAMFFAELYPSETRKLIERLVNYVIYKGTFLPLIVPPTLYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLAIYRTHESSMFLLLFFEPLSIAFETLQALLVHGFQLLDIWIHHSACSSSDFRTPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAMINRIKGFTRLRVALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFTGQPENETNTSAGVISSDEQLARQMSAVFDRQNSARQTMPAGLFPNQTMNNAEGVSWRGAGVDSSWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTSFDEASWNVWPINPSQASASGPSPTVPSPAGRLPGGNGGLHIRTASRSANDNVANVLAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00139 588 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Car05g00139 588 ProSiteProfiles CUE domain profile. 548 588 IPR003892 GO:0043130
Car05g00139 588 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 9 588 - -
Car05g00139 588 SUPERFAMILY RING/U-box 326 386 - -
Car05g00139 588 CDD CUE_RIN3_plant 549 586 IPR035667 -
Car05g00139 588 Pfam Ring finger domain 336 380 IPR001841 -
Car05g00139 588 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 9 588 - -
Car05g00139 588 Gene3D - 547 587 - -
Car05g00139 588 Pfam CUE domain 552 588 IPR003892 GO:0043130
Car05g00139 588 SMART ring_2 338 379 IPR001841 -
Car05g00139 588 MobiDBLite consensus disorder prediction 509 531 - -
Car05g00139 588 CDD RING-H2_synoviolin 335 380 - -
Car05g00139 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 390 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00139 Car-Chr5 3296495 3304895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00139 57 397 C3H Transcription Factor Family AT3G16090 28.338 5.06e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00139 K10636 - gmx:100820578 1021.15