Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00110 ATGGTTGAGATTAGAGAATTGTCTCCAACTATGGAGAACAATAGTAGAGTTTGTACCATTTGTAACAAGTCTTTTTCTAATGGAAAAGCATTGGGAGGTCACATGAAATCTCACTTAGCCAAATTACCGGTCCCTCCAAAACCTCCAAACAATAGTCAAGTAATTGAATACTCACTTGAATCAACAAAAAGACCAACtcattctttctcttcatcttcgtcatcatcttctcattcaAGAAACAATCCTATGCACAATCTTCGTTCTTTGAAAAGGAACTTCTACTATACCCTAGCAAACTTTGGTAGAAATAGTTTTTTTGAGTCTTGTCCGAAAAACCCTACTCGAAAACGATCCAAACGCCACCGAAAACAATTTAAATTGGCCACGGAAAAAAGAGAGAGTACACAATATAGGTTAATGTATGATGAATTTGATATAGAAGCTGCCAAAACACTTGTTATTATTTCTATGAAAGAATGGCAACAAATAGAGGAGAAATACAACAAAGAGATGGCAAAAGTTAATGGAAATGAAAGTACTTGA 546 0.3242 MVEIRELSPTMENNSRVCTICNKSFSNGKALGGHMKSHLAKLPVPPKPPNNSQVIEYSLESTKRPTHSFSSSSSSSSHSRNNPMHNLRSLKRNFYYTLANFGRNSFFESCPKNPTRKRSKRHRKQFKLATEKRESTQYRLMYDEFDIEAAKTLVIISMKEWQQIEEKYNKEMAKVNGNEST 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00110 181 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 11 174 IPR044303 GO:0006355
Car05g00110 181 Coils Coil 158 178 - -
Car05g00110 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Car05g00110 181 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 11 174 - -
Car05g00110 181 Pfam C2H2-type zinc finger 17 40 - -
Car05g00110 181 MobiDBLite consensus disorder prediction 60 85 - -
Car05g00110 181 SUPERFAMILY beta-beta-alpha zinc fingers 15 43 IPR036236 -
Car05g00110 181 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00110 Car-Chr5 2681926 2682471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00110 18 66 C2H2 Transcription Factor Family AT1G02030 42.373 2.24e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g00110 zf-C2H2_6 4.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00110 - - cam:101506958 356.295