Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00097 ATGGTAAAATTATCCATAGACCTGGATCCAATGGACCTAAAGACAAATCACACTCATCGGCTTGCCGATGCTGCAACCATAACAAGGACGAGATCAAGGCTCGGCACGCCTTCAAGTTTATCATGTTCTCCTACAGGTGCTACAACTTTTCTACATGGTCCTTCGCTAGCGATTCCAAGGAAAAAGACAGGAATTCTTGATGATGTTCGTTCCAACGGTTGTCTCGATGCAATGAGATCATCTTCTCCTACTAACAAGAAAATATCAATGGATATTGGTCATGGTGTTGCATTCTTTGATGTTGATGCTGCTTATTTAACATGGCAGTTAGAATTTCCCTCAGCACTTGCATCTTTTGAGCAAATTACTAACTTTGCAAAAGGAAAGAAAATAGTATTGTTTCTCGATTATGACGGGACTCTTTCGCCGATCGTTGACAATCCTGACCATGCTTTCATGTCTGAAAGTATGCGTGCCACTGTTAAAAGCATGGCAAAATATTTTCCTACTGCAATAATTAGCGGAAGATGCCGTGAAAAGGTACATGAATTTGTTGGAGTAACAGATCTTTATTATGCTGGTAGTCATGGAATGGACATTATTGGTCCTCCAAGACAATCTGATAAGCACCCTACTTGCATTAGGTCTACTTATAATAAGGGTAATGAAGTTAATTTATATCAGCCTGCAGCTGAATTCTTGCCTATGATTGATGAGGTACTTAGCTTGCTCATTGAATGTACAAAAGATATCAAAGGAGCAAAGGTTGAGAACAATAAATTTTGTGTCTCGGTACACTATCGTAACGTAGACGAGGAGAATTGGGATATGGTGGCACAAATTGTTTATGATATTCTGAAAGACTATCCACATTTGCGATTAACTCACGGTCGCAAGGTTTTAGAGGTTCGACCAGTGATCGATTGGGATAAGGGAAAAGCTGTTACATATTTGCTTGAATCACTTGGACTTAACGAAGACAACGACGTGCTAGCTATATATATTGGGGACGATCAGACCGATGAAGATGCATTTAAGGTTCTGAGTGAGTTTAATAAAGGTTTTGGAATCTTAGTGTCTTCTGCTCCTAAAGAAAGCAATGCAATTTACTCTCTTTGTGATCCTTCAGAGGTTATGGAATTTCTCAAGTCACTTGTGGTATGGAAATCAATCTCATTAGTATAA 1185 0.3916 MVKLSIDLDPMDLKTNHTHRLADAATITRTRSRLGTPSSLSCSPTGATTFLHGPSLAIPRKKTGILDDVRSNGCLDAMRSSSPTNKKISMDIGHGVAFFDVDAAYLTWQLEFPSALASFEQITNFAKGKKIVLFLDYDGTLSPIVDNPDHAFMSESMRATVKSMAKYFPTAIISGRCREKVHEFVGVTDLYYAGSHGMDIIGPPRQSDKHPTCIRSTYNKGNEVNLYQPAAEFLPMIDEVLSLLIECTKDIKGAKVENNKFCVSVHYRNVDEENWDMVAQIVYDILKDYPHLRLTHGRKVLEVRPVIDWDKGKAVTYLLESLGLNEDNDVLAIYIGDDQTDEDAFKVLSEFNKGFGILVSSAPKESNAIYSLCDPSEVMEFLKSLVVWKSISLV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00097 394 CDD HAD_TPP 132 380 - -
Car05g00097 394 Pfam Trehalose-phosphatase 134 375 IPR003337 GO:0003824|GO:0005992
Car05g00097 394 SUPERFAMILY HAD-like 132 388 IPR036412 -
Car05g00097 394 TIGRFAM T6PP: trehalose-phosphatase 128 386 IPR003337 GO:0003824|GO:0005992
Car05g00097 394 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 133 348 IPR006379 -
Car05g00097 394 Gene3D - 131 228 IPR023214 -
Car05g00097 394 Gene3D - 229 392 IPR023214 -
Car05g00097 394 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 11 392 IPR044651 GO:0004805|GO:0005992
Car05g00097 394 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 11 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00097 Car-Chr5 2448335 2452082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00097 125 385 Trehalose Biosynthesis Gene Families AT1G70290 25.806 4.60e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00097 K01087 - gmx:100783008 563.533