Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00090 ATGGCAATCTTTGAAAAAACATTTTTCATACTCTTATTATTATCTTCAATTTTCTCAATAGTTTCATCAAGAAAAGGACCTTCATCAAGCAACATAGATTGGTGGTGCAACCAAACACCACATCCAAAGCCATGCAAACACTACACAACTCAAATGAACAATCATTTCAAAATCAAACACAAAAGTGAATTCAGGGGAATGCTTGTTCAATTAGCCTTAAAACAAGCTCTTATCATGCAAAAAGAATCACAAAATTCTCAACAAAATTCATCGGTACATCAAACCGTTCACGACGATTGTTTGAAATTGTTTCGAAACACAATCTTTCATCTTAACCGTACATTTGAAGGTTTAAACAATGCAAGCAAAAATTGTTCACCAGATGATGCACAAACATGGCTCACAACATCTCTCACAAATATTGAGACATGTAAAAATGGAGCTTTTGAACTCAATGCTAAAGATTTCAATTTCATTGTGCAAACCAATGTCATTGAGATGATAAGGAATAGCTTAGCCATCAACATGTATTTTATGAAACACAACAGAGAAACAAAAGAAGGTTTTTATCCAAATTGGTTTTCTAGACATGAGAGGAAGTTGTTGAATGCTAATTCAATAGTTAAAGCAAATCTTGTGGTGGCAAAAGATGGTTCTGGAAATTTTAAGACAGTGCAAGCTGCTTTGGATGCTTCTGCTAAGAGAAAATATAAGACAAGGTTTGTGATACATATAAAGAAAGGAGTTTATAGAGAAAATATTGAGGTTGCTGTTCATAATGATAACATTATGTTGGTCGGTGATGGCATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTATACTACTTATAGTTCTGCTACAGCTGGAATTGATGGGCTTCACTTTATTGCACGTGACATTACCTTCCAAAATACCGCAGGCCCCCAAAAGGGTCAAGCCGTGGCGCTTCGATCCGCCTCGGACCTCTCCGTCTTCTATAGGTGTGCCATATCCGGTTACCAAGATACTCTCATGGCTCACGCACAACGTCAATTTTATAGACAATGTTATATCTATGGCACCGTAGATTTCATCTTTGGAAACGCCGCAGTGGTTTTCCAAAATTGTAACATTTTTGTTAGAAAGCCTTTAGACGGCCAAGCCAATATGATCACGGCCCAAGGTCGTGGCGATCCGTTCCAAAACACGGGAATTTCATTTCACAATTGTAAAATTAGGGCTGCTTCAGATCTAAAGCCCGTTATCGACAAGTACAATACCTTCTTGGGCCGGCCTTGGCAACAATACTCAAGAGTGGTGGTAATGAAAACTTTCATGGACACTTTAGTAAGCCCATTGGGTTGGTCTCCATGGGGTGATACTGATTTTGCTCAAGATACATTGTATTATGGAGAGTATGAAAACTATGGGCCTGGTTCATCTACAGCCCATAGAGTGAAATGGCCTGGTTATCATGTGATAACAAGCCCAAATGAAGCCTCGAAGTTTACGGTTACTGGACTCCTTGCAGGCCCAACATGGTTGGCTACCACTACTGTGCCATTTACTTCTGGTCTTTGA 1575 0.3873 MAIFEKTFFILLLLSSIFSIVSSRKGPSSSNIDWWCNQTPHPKPCKHYTTQMNNHFKIKHKSEFRGMLVQLALKQALIMQKESQNSQQNSSVHQTVHDDCLKLFRNTIFHLNRTFEGLNNASKNCSPDDAQTWLTTSLTNIETCKNGAFELNAKDFNFIVQTNVIEMIRNSLAINMYFMKHNRETKEGFYPNWFSRHERKLLNANSIVKANLVVAKDGSGNFKTVQAALDASAKRKYKTRFVIHIKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGYTTYSSATAGIDGLHFIARDITFQNTAGPQKGQAVALRSASDLSVFYRCAISGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFVRKPLDGQANMITAQGRGDPFQNTGISFHNCKIRAASDLKPVIDKYNTFLGRPWQQYSRVVVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTAHRVKWPGYHVITSPNEASKFTVTGLLAGPTWLATTTVPFTSGL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00090 524 PANTHER PECTINESTERASE 1 523 - -
Car05g00090 524 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Car05g00090 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Car05g00090 524 Gene3D - 205 524 IPR012334 -
Car05g00090 524 SUPERFAMILY Pectin lyase-like 206 523 IPR011050 -
Car05g00090 524 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Car05g00090 524 PANTHER PECTINESTERASE 1 523 - -
Car05g00090 524 SMART PMEI_2 27 174 IPR006501 GO:0004857
Car05g00090 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Car05g00090 524 CDD PMEI-like_3 34 180 - -
Car05g00090 524 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 175 IPR006501 GO:0004857
Car05g00090 524 Pfam Pectinesterase 211 509 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00090 Car-Chr5 2329914 2332375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00090 35 524 Carbohydrate Esterase AT5G51490 56.660 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00090 K01051 - gmx:100806133 796.193