Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00088 ATGGGAGCCAAAACAATTGCAAGTTCTTCCAACCATGTTTTCACATTTGCAATCTTCATCTTGCTAGCAATTTCAAGCATTACTTTAGCATATGATGATAATTCTAAATACACTTCAGATACTCTCTCAAATTCCACCAAAACCAATGAAAACGAAACGAATACCGAATTTACAACCTATATAACAAAATCATGCAATTCAACCACGTACCCTTCTATATGCCACAAATCTTTATCTCGATATGCTTCAAAAATTGAAGCAGATCCAGTAAAACTGTGCAACATCGCTTTGTCAGTTGCCTTAAAAGCGGCTCATAATGCATCCGCAACTATATCAAAACATCTAAAGAGTGGTGACACTAATTTGTCAACCACCGTAGAAAAAGTTTTGCAAGATTGCTCTAGCAATTTCGAGGAATCTATAGAACAATTGCAAGACTCAATTGATGCAATGAAAAATTTGGATGGTGTATCTGATAAAGAATTTCAAATTAGTAACATAAAGACTTGGGTTAGTTCTGCCATCACTAATGATCAAACTTGCTATGATGAGTTTGATGAGATGAATGTGGACACCACACTTAGGGATCAAATTAGAAGCAGAGTTTTGAATGTGGTTATGAAGACTAGTAATGCTTTGTATTTCATCAACCATACCTATTAA 663 0.3484 MGAKTIASSSNHVFTFAIFILLAISSITLAYDDNSKYTSDTLSNSTKTNENETNTEFTTYITKSCNSTTYPSICHKSLSRYASKIEADPVKLCNIALSVALKAAHNASATISKHLKSGDTNLSTTVEKVLQDCSSNFEESIEQLQDSIDAMKNLDGVSDKEFQISNIKTWVSSAITNDQTCYDEFDEMNVDTTLRDQIRSRVLNVVMKTSNALYFINHTY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00088 220 PANTHER PECTINESTERASE INHIBITOR 4 8 219 - -
Car05g00088 220 SMART PMEI_2 56 215 IPR006501 GO:0004857
Car05g00088 220 CDD PMEI-like_3 64 218 - -
Car05g00088 220 Coils Coil 134 154 - -
Car05g00088 220 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 218 IPR035513 -
Car05g00088 220 Pfam Plant invertase/pectin methylesterase inhibitor 60 213 IPR006501 GO:0004857
Car05g00088 220 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 219 - -
Car05g00088 220 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 219 IPR035513 -
Car05g00088 220 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 218 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00088 Car-Chr5 2310102 2310827 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00088 44 213 Carbohydrate Esterase AT5G53370 29.143 1.26e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00088 - - gmx:100527443 227.254