Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00082 atgttAAGAGGTAGTAGTTTTGAAATTGGTAGGTATCTGTTTTTGAGTTGGCCGGGTTTCTTCGAGCAAACTCTGTCTGTTTCGCGCTTCCTCTTGCTTCTTAAGACGACTTGGAGTCTGGAACACATAGTCCTTGTTCATTACCGTGAAACGCAAGAGGTCCTGGTGACTGGATTCTTTCATGAAGACTACATGCACATCTCTAAAACCAATCTAATGTGTGTCTGTGGTGATGCAAGTGTTCCTGCAGAAATTGTTCATGATGGAGTCTACCGATGCTGGATACCACCGCATTCGAAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTAGGATATACATGGGCTGTTACTTTATTTTCATGGTCAGGCTTGTCGCTTGATTTTCGGGATAAATTTGGATGGACTGCACTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTATTGTCAGCTGGGGCAAAGCCTAACTTGGTCACAGATCCAACTCACCAAAATCCTGTTGGATGTACTGCTGCTGATCTTGCTTATAATAGGGGTTATCATGGCTTATCAGCTTATCTTTCGGAAAAGTCTCTAGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAATACGGATGATCCAGTAAATTCTGAGAACTTTTCCCAGGAGCAGATCTACATGAAAGATCAGCACAATGATGTAGAGGAGGAATTCTTTCGAACTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCGAAGAAAGCTCAAGAAGATTATAGGAAACAAGCTGGTACCTCATTTATACTATATTGGCGATGCAAATGGAAAGGTGATGCTTGCTCATGCTGCCAGTGCTCAAGGAATTTCAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGGTTTGAAGGGAGGGAATTGCCCAGGCTTGACATTGCTAACTGTCATTTACATTGTCATGCATTTGATATACAAACCTGACGATGGAGAAATCCTAGGAGTTCATATTTTTGGTTTGCACGCAGCAGATCTCATCCATGAAGCATCCAATGCTATAGCATTAGGGACACGTATTCAGGACATAAAACTTGCAGTTCATGCACATCCAACTCTGTCTGAGGTTCTTGATGAGTTATTTAAATCAGCAAAGATTCATTTTCAGAGATATACAATTCGGTGGATATATACAAACCCTAGCCGCTTTATTCCTAATTTCCCTTACAGAAAACCCTAG 1287 0.4204 MLRGSSFEIGRYLFLSWPGFFEQTLSVSRFLLLLKTTWSLEHIVLVHYRETQEVLVTGFFHEDYMHISKTNLMCVCGDASVPAEIVHDGVYRCWIPPHSKGQSVIHLCAILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPVGCTAADLAYNRGYHGLSAYLSEKSLVEQFNDMSLAGNISGSLETNTDDPVNSENFSQEQIYMKDQHNDVEEEFFRTGRKQAEERVERSVIRVQAMFRSKKAQEDYRKQAGTSFILYWRCKWKGDACSCCQCSRNFSLKQGRKVKRRGLKGGNCPGLTLLTVIYIVMHLIYKPDDGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDELFKSAKIHFQRYTIRWIYTNPSRFIPNFPYRKP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00082 428 Gene3D Immunoglobulins 47 117 IPR013783 -
Car05g00082 428 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 235 279 - -
Car05g00082 428 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 100 237 - -
Car05g00082 428 ProSiteProfiles Ankyrin repeat profile. 133 165 IPR002110 GO:0005515
Car05g00082 428 SUPERFAMILY Ankyrin repeat 99 195 IPR036770 -
Car05g00082 428 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 335 398 IPR016156 GO:0016491|GO:0050660
Car05g00082 428 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 53 101 - -
Car05g00082 428 ProSiteProfiles Ankyrin repeat region circular profile. 133 161 - -
Car05g00082 428 Pfam Ankyrin repeats (3 copies) 97 162 IPR002110 GO:0005515
Car05g00082 428 ProSiteProfiles IQ motif profile. 258 284 IPR000048 GO:0005515
Car05g00082 428 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 53 101 - -
Car05g00082 428 SMART ANK_2a 133 162 IPR002110 GO:0005515
Car05g00082 428 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 336 395 IPR004099 GO:0045454
Car05g00082 428 Gene3D - 130 197 IPR036770 -
Car05g00082 428 PRINTS Pyridine nucleotide disulphide reductase class-I signature 371 391 - -
Car05g00082 428 PRINTS Pyridine nucleotide disulphide reductase class-I signature 349 364 - -
Car05g00082 428 PRINTS Pyridine nucleotide disulphide reductase class-I signature 150 164 - -
Car05g00082 428 Gene3D - 336 407 IPR016156 GO:0016491|GO:0050660
Car05g00082 428 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 235 279 - -
Car05g00082 428 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 100 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00082 Car-Chr5 2257280 2262269 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00082 235 279 CAMTA Transcription Factor Family AT3G16940 62.222 3.11e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00082 K21596 - cam:105851068 437.187