Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00058 ATGAGAAATaatgaaaatgaaaatgaaaatcaaaatgaaaatgaaaatCAGTGTGAGAGTGAAGTCACAAACAAAAACCCTTATCCTCCGCCAACTGCTGAATACAATGACCTAATTCATGATCCTAATCTCTTCCATCAAAAGCTTCAATCTTTTCACGATTCATTTGGTACCAAATTAAAGATTCCTACTATAGGGGGAAAGCCACTAGATCTACATCACCTTTTCGTTGAAGTAACATCTCGCGGTGGTGTGGAAAAGGTGATTGTGGATCGGAAATGGAAGGAAGTGATTATGACGTTCAAGTTCCGAGATACCATAACAAGTGCATCATTCATGGTGCGTAGGTACTATCTATCGTTGCTTTATCACTTTGAGCAAGCGTATTATTTTCGCAAGCAAGTCCCTCCCTCAACACCTGATGTTGTGAGTGGGAGTCTTGGCAATAGCTCCACAATCAATAGGGAGGGTGCTTCTATCAACGATTCACCTTTTCAGGTTAGTCCAGCACAGACACTTGGTTCTGCAGTGCATGGAACAATTGATGGGAAATTTGATGGTGGATATATAGTTACAGTGGACCTTGGTTCTGAACAGCTGAAAGGAGTCCTGTATCATGTTCCTAGTAATGTGTCTCAGAGTTCTTACGCTGAAGGCTAA 660 0.397 MRNNENENENQNENENQCESEVTNKNPYPPPTAEYNDLIHDPNLFHQKLQSFHDSFGTKLKIPTIGGKPLDLHHLFVEVTSRGGVEKVIVDRKWKEVIMTFKFRDTITSASFMVRRYYLSLLYHFEQAYYFRKQVPPSTPDVVSGSLGNSSTINREGASINDSPFQVSPAQTLGSAVHGTIDGKFDGGYIVTVDLGSEQLKGVLYHVPSNVSQSSYAEG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00058 219 Pfam ARID/BRIGHT DNA binding domain 44 126 IPR001606 GO:0003677
Car05g00058 219 SMART bright_3 40 131 IPR001606 GO:0003677
Car05g00058 219 SMART ARID_2 36 126 - -
Car05g00058 219 MobiDBLite consensus disorder prediction 1 36 - -
Car05g00058 219 Coils Coil 1 21 - -
Car05g00058 219 CDD ARID_HMGB9-like 41 126 IPR045303 GO:0003677
Car05g00058 219 SUPERFAMILY ARID-like 39 138 IPR036431 GO:0003677
Car05g00058 219 ProSiteProfiles ARID domain profile. 39 130 IPR001606 GO:0003677
Car05g00058 219 Gene3D - 32 140 IPR036431 GO:0003677
Car05g00058 219 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 8 214 - -
Car05g00058 219 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 214 - -
Car05g00058 219 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00058 Car-Chr5 1782729 1785141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00058 33 214 ARID Transcription Factor Family AT3G13350 50.820 1.53e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car05g00058 ARID 4.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00058 - - cam:101515565 338.576