Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00055 ATGTCGATGATACTAAGAAAAGTGTGGAAAATTATGTTGAGACGAAATCAAACATCTTCAGATGAAGAAAAACAACAAGTGTTGGTACAACGTAGGGGTGATTTAGGTGAATTGGATCAACTACCAAGTGACATCTTGATACAAATTTTGAGACTTTTGGGTCCAAAAGAAGTTGCAAAGCTTAGTGTGATTTGCAAGGGTTTGAGATTTTTGGTATCTGATAATCGTTTATGGCTTCACTTTCTTCAGAGACATCAAGCTGATCCATCTTGGGATTCTGTTTTCTTTGCTGAAACTAATTTGACTTCTGGTTACCCTATTCCATCCTTTGTTGGCCAAAGGCCTCAGCTATCATTCAAACAAATTTATGGGCAGAGAGCACAGGTTCCTGGTGCTATTATCATTGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGTAAATACGCTTGTCCGTCTGGGCGATCCGCAACATTTTTGGAATTTGGCAACCTTGAATCGCCAATGTATACTAGGCTTCGGCATTTTTTTGCAACTATTTATAACAGGATGCGGGTGAAATCAGATAAACAACCGGTTATTGTTTCTATACCATTATGCCATTATGATGATACTGAATCAGCCAGAGCATCAAGACGACAACTTAAAGAAGCGATTTATAGTTCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTATGCTGCAAAACGAACTTCCGGAATAGTTGTTAATATAGGTTTTCAAGTCACATCAGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTCGGTGTGGAAGTTCTTGGACTAGGAGCAATGAAACTTACTGGGTTTCTTAAGGAGAAGATGCAACTGAACAACCTAAATTTTCAATCTTTGTACACTGTTCGTGCTTTGAAAGAGAATCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATTAAAAGAAAACACACAAGCATCATTTCAAACTGCAGGAGATGGATGGTTTACACTTTCAAAAGAGAGGTTTCAGACAGCAGAGATTTTATTCAAGCCACATCTTTCTGGAATGCTAGTCATGGGTTTGCACCAGGCTATAGCTGTTTGTATGGAGCATTGTCATTCTGCAGAACTAACGGGCGACAGTGATTGGTACAAGACGGTAGTTTTATCGGGAGGAACTGCATGTTTGCCAGGTTTGGCAGAAAGATTAGAGAAGGAACTCCATGCATTACTTTCTCCATACATGGCAAATGGAATTAGAGTCATCCCTCCGCCATACGACGTCGATACTCCATGGTTCGGAGCAAAGATGATTGGCAATTTGAGCACATTTCCTGGTTCTTGGTGTGTAGCAAAAAAGCAGTTTCGCCAGAAGCCTAGGCTCAGCCTCATATGGTGA 1416 0.4047 MSMILRKVWKIMLRRNQTSSDEEKQQVLVQRRGDLGELDQLPSDILIQILRLLGPKEVAKLSVICKGLRFLVSDNRLWLHFLQRHQADPSWDSVFFAETNLTSGYPIPSFVGQRPQLSFKQIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNLESPMYTRLRHFFATIYNRMRVKSDKQPVIVSIPLCHYDDTESARASRRQLKEAIYSSLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVLGLGAMKLTGFLKEKMQLNNLNFQSLYTVRALKENLCYVALDYEAELLKENTQASFQTAGDGWFTLSKERFQTAEILFKPHLSGMLVMGLHQAIAVCMEHCHSAELTGDSDWYKTVVLSGGTACLPGLAERLEKELHALLSPYMANGIRVIPPPYDVDTPWFGAKMIGNLSTFPGSWCVAKKQFRQKPRLSLIW 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00055 471 SMART actin_3 130 461 IPR004000 -
Car05g00055 471 PANTHER MACRONUCLEAR ACTIN 85 468 - -
Car05g00055 471 CDD NBD_sugar-kinase_HSP70_actin 133 278 - -
Car05g00055 471 SMART fbox_2 41 81 IPR001810 GO:0005515
Car05g00055 471 Gene3D Actin; Chain A, domain 4 280 364 - -
Car05g00055 471 SUPERFAMILY Actin-like ATPase domain 131 252 IPR043129 -
Car05g00055 471 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Car05g00055 471 SUPERFAMILY Actin-like ATPase domain 246 455 IPR043129 -
Car05g00055 471 PANTHER ACTIN 85 468 IPR004000 -
Car05g00055 471 Gene3D - 237 436 - -
Car05g00055 471 Gene3D - 176 463 - -
Car05g00055 471 SUPERFAMILY F-box domain 36 95 IPR036047 GO:0005515
Car05g00055 471 Gene3D - 24 105 - -
Car05g00055 471 Pfam F-box domain 38 79 IPR001810 GO:0005515
Car05g00055 471 Pfam Actin 180 461 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00055 Car-Chr5 1754541 1763276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00055 179 463 Cytoskeleton Gene Families AT3G12110 33.447 8.14e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00055 K16616 - gmx:100791973 780.015