Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00025 ATGGAAGGAAGGGAAGAAGGACCGCCAAGAAACGATCTATGTTCAGTTTGTCATGGAAATTTCGATATTCCATGTCAAGCTAACTGTTCTCATTGGTTTTGCGCTAACTGTATTCTTCTTGTTTGGCAACACTCTTCTTCTGCTCTTCAACCTTGTAAATGTCCACTTTGTCGTAGACCTATTACCCTTTTAGTACCAAATTCCCAATCCAATAACAACCCTTCTCTTCTCTCTCAAATTCAAACTTATAACCGTCTTTTTGGTCATCAATCTAATTCACCCTTTTCTCAGAGATTACTTGATCTTCCTTTTCTTTTGAAGAGACTTTTTTGGGATTTCTTTGATCCTTCTAGATCTCTTCCTCTTGTTATTAGAGCTCGTGTTTTTATTGCTACAGTTCTGAGTGCTATATACATCTTGAGCCCTATCGACATCATTCCAGAAGGTGTATTGGGAATAATTGGTCTCTTGGATGATCTTCTAATTGCACTAATCTTCTTCCTACATGTTGCTGCCCTTTATAGATCAGTACTTTACCGCCGTCACGGGGGTTTGTGA 558 0.3889 MEGREEGPPRNDLCSVCHGNFDIPCQANCSHWFCANCILLVWQHSSSALQPCKCPLCRRPITLLVPNSQSNNNPSLLSQIQTYNRLFGHQSNSPFSQRLLDLPFLLKRLFWDFFDPSRSLPLVIRARVFIATVLSAIYILSPIDIIPEGVLGIIGLLDDLLIALIFFLHVAALYRSVLYRRHGGL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00025 185 Pfam Protein of unknown function (DUF1232) 131 164 IPR010652 -
Car05g00025 185 ProSiteProfiles Zinc finger RING-type profile. 14 58 IPR001841 -
Car05g00025 185 PANTHER BNAC07G13660D PROTEIN 9 184 - -
Car05g00025 185 PANTHER UNCHARACTERIZED 9 184 IPR038896 GO:0061630
Car05g00025 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 98 IPR013083 -
Car05g00025 185 SUPERFAMILY RING/U-box 11 67 - -
Car05g00025 185 SMART ring_2 14 57 IPR001841 -
Car05g00025 185 ProSitePatterns Zinc finger RING-type signature. 29 38 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00025 39 184 C3H Transcription Factor Family AT1G72175 65.132 2.67e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00025 K15707 - pvy:116125921 244.588