Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00019 ATGGGTGAATACGAATTCGAATTCGAAGAGGGAAGATTCGAACAACAACAAGAAGAAAAAGTGTatcatcatcatgataatagtcatgataatcagaatcatgacaacaatcataatgatTCCTCTCCACAACCACCTGTTGCTGATGAAGATCTCACCGACATCAAATCCAACCATGGTTCTCGTGATAATGACAGAGAATCCTCCAGAAAGATGGGGAAAAAAGcagagacaggGAGTCGAGACTATGACAGACGGAGGGATTATGATAGAGAGGATAGGCATAGGCGCaggtctcgatctagatcaaggtcaagggctcggtctgagcataggtcaagtgctcgatctgagcatagatcaagatcACGTTCTCGCTCACGCTCTAAAAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCTGCGATGTTGGCTGGTGCTTCTGCTGTTGCAGGTCAGATCACTGGGGCAAGTTCTGCAATTCCCGGAATGTTTCCAAATATGTTTCCCCTGGCTACAAGTCAGATGCAGCCATTTAGTGCTCTCCCTGTCTTGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACGATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTTGTGAATGTTTACATCAACCATGATAAGAAGTTTGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCGAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGTGCACCAGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCTCTAGCTGCTACCCTAGGGCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCTGTTGGCCTATCACCTGGGTCTGCTGGAGGACTTGATGGTCCTGATCGGATTTTTGTTGGTGGAGTTCCATATTACTTTACTGAAACACAAATCAGAGAACTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGGCGAGCTAATCAAGGTACAAACCCAATGCAGCCTAAACCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTTATGTTACAACCAGCATTGGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCAGCCGATGAGCTCAAAGATGATGAGGACTATGAAGAGATTCTTGATGATATGCGACAGGAATGCTCCAAATTTGGTAATTTGGTGAATGTGGTGATCCCTCGCCCACGACCTGATGGTGAACTGTGTCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGATGGTTCTACAAAAGCTCGTGGTGGACTGAATGGAAGGAAATTTGGGGGGAATCAAGTAATAGCTGTCTTTTATCCAGAGAACAAATTTGCTCAAGGCGATTACGAGGGCTAA 1617 0.4125 MGEYEFEFEEGRFEQQQEEKVYHHHDNSHDNQNHDNNHNDSSPQPPVADEDLTDIKSNHGSRDNDRESSRKMGKKAETGSRDYDRRRDYDREDRHRRRSRSRSRSRARSEHRSSARSEHRSRSRSRSRSKSKRTSGFDMAPPASAMLAGASAVAGQITGASSAIPGMFPNMFPLATSQMQPFSALPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSADELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGKVFLEYADVDGSTKARGGLNGRKFGGNQVIAVFYPENKFAQGDYEG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00019 538 Gene3D - 197 298 IPR012677 -
Car05g00019 538 SUPERFAMILY RNA-binding domain, RBD 323 528 IPR035979 GO:0003676
Car05g00019 538 CDD RRM3_U2AF65 436 524 - -
Car05g00019 538 CDD RRM1_U2AF65 201 283 - -
Car05g00019 538 SMART rrm1_1 203 281 IPR000504 GO:0003723
Car05g00019 538 SMART rrm1_1 323 396 IPR000504 GO:0003723
Car05g00019 538 SMART rrm1_1 444 525 IPR000504 GO:0003723
Car05g00019 538 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 400 IPR000504 GO:0003723
Car05g00019 538 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 78 537 - -
Car05g00019 538 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 393 IPR000504 GO:0003723
Car05g00019 538 PANTHER RNA-BINDING PROTEIN 26 79 - -
Car05g00019 538 Gene3D - 313 413 IPR012677 -
Car05g00019 538 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 285 IPR000504 GO:0003723
Car05g00019 538 MobiDBLite consensus disorder prediction 1 142 - -
Car05g00019 538 MobiDBLite consensus disorder prediction 1 36 - -
Car05g00019 538 CDD RRM2_U2AF65 322 398 - -
Car05g00019 538 Gene3D - 432 537 IPR012677 -
Car05g00019 538 MobiDBLite consensus disorder prediction 52 96 - -
Car05g00019 538 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 57 536 IPR006529 GO:0003723|GO:0005634|GO:0006397
Car05g00019 538 PANTHER RNA-BINDING PROTEIN 78 537 - -
Car05g00019 538 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 26 79 - -
Car05g00019 538 SUPERFAMILY RNA-binding domain, RBD 90 282 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00019 Car-Chr5 557620 563586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00019 324 517 Eukaryotic Initiation Factors Gene Family AT1G22760 25.128 5.94e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00019 K12837 - gmx:100793801 764.222