Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00013 ATGCAGCCTCGCCAGAGTTGTGTCCGGTCATCGGCAGCGGAGGAGAAAAAGAAATCAAAACATTTTATGAAGGCCATTCTTCCCTCACCTATTCATGCTACTCAACTAAGAATTCCAGATGAATTTATAACAAGATTTGGGAATGAACTCAACAATGTTACTACAATTACTGTTCCTGATGGTTGTATTTGGAAAATCACACTCAACAAATGCGGCAAAGACGTTTTCTTCCAAAACAATTGGCAAGAATTCACAGAATACTATTCAATAGGTTATGGTTCATATTTAGATTTCAAGTATAAAGGGAAATCTAAGTTTAATGTCATTATATTTGATTCAACTTCTGTTGAGATTTGCTATCCAAGTACTAATGAAGAACCAAACATAAAGTGTCCTAGGAAAATATCCAAGGTTGAAACAAGTGACAAGAATCATGGGACTGAATTCAACTCTGCTTCTAAAAGAGCAAAGGATGCTGCTTTTTTTCGTTCAACATTCATTAAAAACAGATATCCGTATGTTCATTCTGATTTTGCTTCAAAGTATCTGAAGCCAAATGTTCCATTCAAGCTCCAAAATTGTCATGGACAGCAATGGAAAGTATTTTGTGCATTGCAAGAAGCTGGAAAATCGGCAATGCGAATAACGAGGGGATTCAGAAAATTTGCAAGGGAAAACAATCTGTCATGTAGAAAGGAATATGAGTTTAAGCTGATCAAGAGGAAGCCTGTTGTTGTGCTACAAGTTACTACATCTTGCACGCCTTGCCGGCGAAGGTGTGTCGGGTCATCGGTGGAGAAGGAAGTTAGGGAATCAAAACATTTTAAAAAGGCCATACTTCCCTCACCCTTTCATGCCAACAAAATTAGAATTCCAGATGAATTTATAAGAAGATTTGGAAATGAACTCAGTAATGTTGCTACAATTACTGTTCCTGATGGTTCTATTTGGAAATTCACACTCAACAAATGCGGCAAAGATGTTTTCTTTTCCAACAATTGGCAACAATTCACACAATACTATGATATAGGATATGGTTCCTACCTGTCTTTCAAATATAAAGGGAATTCTAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGTTATCCAAGTACTAATGAAGAACCAAACATAAAGTCTCCTAGTCCTAATCCTGGTCCTAAGAAAAGGTCCAAGGTTGACACAACTGAGAAGAATCATGAGACTAAATTCATATATGCTTCTAAAAGAGCAAAGGATGCTGCCAATCAGTTCTACCCGAAAAACCCGTTTTTTCGGTCAACATTAAATAAAAATAGATATACATATGTTGCTTCTAATTTTGCTGAAAAGTATCTTCTGCCGAAGGTTCCTATCAAGCTCCAAAATTCTCATGGACAGCAGTGGGAAGTTTCTTGTGTATTCAATATGGGCAGAACATTCGGAATGAGGATAACAGGTGGATTTTGTAAATTTCAAAGGGATAACAATCTGTCATTGGGAGATACTTGCGTGTATGAGCTGATCAAGACGAAGCCGGTGGTCGTGTTACTAGTCACAGAGTTTCGTGCGGATCACTATCTCCATTAA 1581 0.3707 MQPRQSCVRSSAAEEKKKSKHFMKAILPSPIHATQLRIPDEFITRFGNELNNVTTITVPDGCIWKITLNKCGKDVFFQNNWQEFTEYYSIGYGSYLDFKYKGKSKFNVIIFDSTSVEICYPSTNEEPNIKCPRKISKVETSDKNHGTEFNSASKRAKDAAFFRSTFIKNRYPYVHSDFASKYLKPNVPFKLQNCHGQQWKVFCALQEAGKSAMRITRGFRKFARENNLSCRKEYEFKLIKRKPVVVLQVTTSCTPCRRRCVGSSVEKEVRESKHFKKAILPSPFHANKIRIPDEFIRRFGNELSNVATITVPDGSIWKFTLNKCGKDVFFSNNWQQFTQYYDIGYGSYLSFKYKGNSKFSVIIFDATSVEICYPSTNEEPNIKSPSPNPGPKKRSKVDTTEKNHETKFIYASKRAKDAANQFYPKNPFFRSTLNKNRYTYVASNFAEKYLLPKVPIKLQNSHGQQWEVSCVFNMGRTFGMRITGGFCKFQRDNNLSLGDTCVYELIKTKPVVVLLVTEFRADHYLH 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00013 526 SUPERFAMILY DNA-binding pseudobarrel domain 170 249 IPR015300 -
Car05g00013 526 ProSiteProfiles B3 DNA-binding domain profile. 274 367 IPR003340 GO:0003677
Car05g00013 526 MobiDBLite consensus disorder prediction 377 403 - -
Car05g00013 526 Gene3D - 13 115 IPR015300 -
Car05g00013 526 Gene3D - 267 368 IPR015300 -
Car05g00013 526 Gene3D - 141 253 IPR015300 -
Car05g00013 526 Gene3D - 410 525 IPR015300 -
Car05g00013 526 Pfam B3 DNA binding domain 276 366 IPR003340 GO:0003677
Car05g00013 526 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Car05g00013 526 Pfam B3 DNA binding domain 430 509 IPR003340 GO:0003677
Car05g00013 526 ProSiteProfiles B3 DNA-binding domain profile. 456 519 IPR003340 GO:0003677
Car05g00013 526 SUPERFAMILY DNA-binding pseudobarrel domain 18 113 IPR015300 -
Car05g00013 526 CDD B3_DNA 273 365 IPR003340 GO:0003677
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING 17 137 - -
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING 402 521 - -
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING 145 251 - -
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING 268 388 - -
Car05g00013 526 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Car05g00013 526 CDD B3_DNA 443 509 IPR003340 GO:0003677
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 268 388 - -
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 145 251 - -
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 402 521 - -
Car05g00013 526 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 17 137 - -
Car05g00013 526 SUPERFAMILY DNA-binding pseudobarrel domain 424 519 IPR015300 -
Car05g00013 526 SMART B3_2 275 367 IPR003340 GO:0003677
Car05g00013 526 SMART B3_2 161 251 IPR003340 GO:0003677
Car05g00013 526 SMART B3_2 22 114 IPR003340 GO:0003677
Car05g00013 526 SMART B3_2 428 518 IPR003340 GO:0003677
Car05g00013 526 CDD B3_DNA 20 112 IPR003340 GO:0003677
Car05g00013 526 SUPERFAMILY DNA-binding pseudobarrel domain 272 366 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00013 Car-Chr5 340194 352317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00013 378 526 B3 DNA Binding Superfamily AT3G18990 37.179 1.11e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car05g00013 B3 1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00013 - - mtr:MTR_3g005420 579.326