Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03629 ATGCCAAATCCATCTTGTAATGGAGCAACCATGGAGGAATTAGAAGAGAAAAGAGGAGCCCAAGTAGTAGCAAAGCTTCATGCAATTCTTAGGCCATATCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTGTATATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGAACATTTAATTAATGAGACACTAGGGAAATATTTGAATGACAAACTTTCAATTGGACGCTCTGTGACAAAGCTCAATAATTTGGTTCTTCAACTTAGGAAAGTCTGTAACCATCCTGACCTCCTAGAATCGGCTTTTGATCGTTCATATTTTTATCCTCCTGTGAATGAGATCATTGAACAATGTGGAAAATTCCATTTGCTCAACCGATTGTTGGAACGGCTATTTGCACGAAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAGAGTGTTGGATATAATGGATTATTATTTCAGTGAAAAAGGCTTCGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGAGGATAGGAAACGGCAGATCCAGGACTTCAATGATACAAACAGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGATTGGGTACTTTTGACTTTTCCTGTTTGGCATTTATCTATTTGCTTCACAACATTTAACTTAAACTATGCTTACGACTTCATTGTACTACAGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCATGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCGAATGTTAAAAAGAGCTTTCAACAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGGTTTATGTCATAGGCTTGGCTGAAATTTTTAGGCTTGGCTCATTTAAAGATGAAGCAAAAGAGATTGTTGAGATGTCAACAGTGGAAGCCTATCGCATGGCTATGAAAAGTGTGGTTAGATGGGTGAGAATGAACATGAAACCTAACAAGACTAGAGTCTTCTTCACTAGCATGTCACCTTCTCATGGAAGGCAAGTTTAG 1179 0.3978 MPNPSCNGATMEELEEKRGAQVVAKLHAILRPYLLRRMKSDVELMLPRKKEIIVYANMTEHQKSLQEHLINETLGKYLNDKLSIGRSVTKLNNLVLQLRKVCNHPDLLESAFDRSYFYPPVNEIIEQCGKFHLLNRLLERLFARNHKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLEDRKRQIQDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWVLLTFPVWHLSICFTTFNLNYAYDFIVLQNPQMDLQAMDRCHRIGQTKHVHVYRLATAQSVEGRMLKRAFNKLKLEHVVIEKGQFHQERTKPAIVDEMEVYVIGLAEIFRLGSFKDEAKEIVEMSTVEAYRMAMKSVVRWVRMNMKPNKTRVFFTSMSPSHGRQV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03629 392 PANTHER SNF2/RAD54 HELICASE FAMILY 251 328 - -
Car04g03629 392 PANTHER SNF2/RAD54 HELICASE FAMILY 7 227 - -
Car04g03629 392 CDD SF2_C_SNF 119 282 - -
Car04g03629 392 SMART helicmild6 159 272 IPR001650 -
Car04g03629 392 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 341 390 IPR026057 GO:0016740
Car04g03629 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 318 IPR027417 -
Car04g03629 392 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 251 328 - -
Car04g03629 392 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 7 227 - -
Car04g03629 392 Pfam SNF2-related domain 17 108 IPR000330 GO:0005524|GO:0140658
Car04g03629 392 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 133 318 IPR001650 -
Car04g03629 392 Pfam Helicase conserved C-terminal domain 134 272 IPR001650 -
Car04g03629 392 Gene3D - 43 364 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03629 Car-Chr4 65781722 65784037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03629 99 292 RAD5 or RAD16-like Gene Family AT5G43530 30.612 6.75e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g03629 Helicase_C 6.6e-16 CL0023