Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03610 ATGCTAGATGCAGTGCTTCTGGCGCTCTTCTTGCCATGTCTCGGCATGAGCGCCATCTTCATAATCTACATGTGTCTACTCTGGTACGCCACCACCCACCGTCCACGCAACAACATCAACGCTATACAACCTGTCAAGCCCGTCACCGATAACGGCCTTTCTCCTTCTGACCTCCAAAAGTTACCCACTATCACCGGTAAAGATCTCCTCGCTGCTCCCGAATGTGCCGTTTGTCTTGATGAAATTGGTCTTGACCAATCCGTACGTGTCATTCCGGGTTGCAATCATTCATTCCATTTGGAATGCGCTGACACGTGGCTTTCCAGAAACCCTCTCTGCCCTGTTTGTAGAGCCAAACTTGATGCTAATTTTTTCATCGCTTCCTCCTCTCTAAATTCTTGTTAA 405 0.484 MLDAVLLALFLPCLGMSAIFIIYMCLLWYATTHRPRNNINAIQPVKPVTDNGLSPSDLQKLPTITGKDLLAAPECAVCLDEIGLDQSVRVIPGCNHSFHLECADTWLSRNPLCPVCRAKLDANFFIASSSLNSC 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03610 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 123 IPR013083 -
Car04g03610 134 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Car04g03610 134 Pfam Ring finger domain 74 117 IPR001841 -
Car04g03610 134 SMART ring_2 75 116 IPR001841 -
Car04g03610 134 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 129 - -
Car04g03610 134 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 129 - -
Car04g03610 134 SUPERFAMILY RING/U-box 74 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03610 Car-Chr4 65556189 65557543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03610 1 124 C3H Transcription Factor Family AT5G42200 50.394 3.18e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03610 K19037 - gmx:100817919 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03610 04 65556189 65557543 Car04g03610 04 65556189 65557543 ECH
Car04g03610 04 65556189 65557543 Car05g03288 05 77602361 77603300 PCT