Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03607 ATGACATTAACTGTAAATACAAATTCTGTTTTTGTATTACATTCTATCTTTCTACATTCCTTTACTAAGTGTCTTGAGCATTCATCAACCACCAATAACAAAATGACCAAACTTTTGTTTATTTTGACCACCCTCATTGGATTATGCTTTTTCACATTAAATTCCTATGCCTTCTCACCTTCAGGATGGACCAATGGTCATGCCACTTTTTATGGGGGTAGTGATGCTTCAGGGACTATGGGAGGAGCATGTGGTTATGGGAATCTGTATTCAACAGGATATGGAACTAGAACAGCTGCTTTAAGTACTGCTTTGTTTAATGATGGAGCTTCATGTGGGGAGTGCTATAAAATCATTTGTGATTATAAAACAGATCCAAGATGGTGCATAAAAGGAAGATCTATTACCATAACTGCCACTAATTTCTGTCCTCCTAATTATGATCTTCCAAACAACAATGGAGGATGGTGCAACCCACCTCTCAAGCATTTTGATATGGCTCAACCTGCTTGGGAAAAGATTGGAATCTACAGAGGTGGGATCATCCCCGTTTTATTCCAAAGGGTTCCTTGCAAAAAGCATGGAGGGGCTAGGTTCAGTGTGAACGGGAGAGACTACTTTGAACTAGTGTTAATCAGCAATATAGGTGGTGCTGGATCAATCCAATCTGTGTCCATTAAAGGCTCCAAATCTGGTTGGATGGCTATGTCAAGAAATTGGGGTGCTAATTGGCAATCAAATGCTTATTTGAATGGCCAATCTTTGTCATTTAAGGTCACAACCACTGATGGAGACACCAGAATTTTCCAAGATATTGTTCCTTCTAATTGGGCATTTGGCCAAACTTTCTCTAGCCGCCTCCAATTCTAA 870 0.3966 MTLTVNTNSVFVLHSIFLHSFTKCLEHSSTTNNKMTKLLFILTTLIGLCFFTLNSYAFSPSGWTNGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDYKTDPRWCIKGRSITITATNFCPPNYDLPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLFQRVPCKKHGGARFSVNGRDYFELVLISNIGGAGSIQSVSIKGSKSGWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGDTRIFQDIVPSNWAFGQTFSSRLQF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03607 289 PRINTS Expansin signature 93 107 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 122 133 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 135 145 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 154 171 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 171 184 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 195 207 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 242 263 IPR002963 GO:0009664
Car04g03607 289 PRINTS Expansin signature 271 287 IPR002963 GO:0009664
Car04g03607 289 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 206 285 IPR007117 -
Car04g03607 289 PRINTS Expansin/Lol pI family signature 62 77 IPR007118 GO:0005576
Car04g03607 289 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Car04g03607 289 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576
Car04g03607 289 PRINTS Expansin/Lol pI family signature 179 195 IPR007118 GO:0005576
Car04g03607 289 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Car04g03607 289 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576
Car04g03607 289 Gene3D - 198 289 IPR036749 -
Car04g03607 289 Pfam Lytic transglycolase 98 185 IPR009009 -
Car04g03607 289 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 196 IPR007112 -
Car04g03607 289 SUPERFAMILY Barwin-like endoglucanases 62 214 IPR036908 -
Car04g03607 289 SUPERFAMILY PHL pollen allergen 194 285 IPR036749 -
Car04g03607 289 PANTHER EXPANSIN 37 289 - -
Car04g03607 289 Pfam Expansin C-terminal domain 198 274 IPR007117 -
Car04g03607 289 Gene3D - 51 192 IPR036908 -
Car04g03607 289 PANTHER EXPANSIN-A15 37 289 IPR002963 GO:0009664
Car04g03607 289 SMART dpbb_1 98 186 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03607 Car-Chr4 65538901 65541069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03607 98 289 Expansin Gene Family AT1G20190 78.646 8.86e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03607 - - lang:109341531 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03607 04 65538901 65541069 Car04g03607 04 65538901 65541069 ECH