Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03578 ATGGATACGGACTTTGACGAAACTAAAGATGGAAAACTCGTTTTGGTAATCTTAGTGGGAGCGCCTGGGAGCGGGAAATCCACTTTCTGTGAAGATGTCATGCGTTCCTCTTCTCGCCCTTGGATACGCATTTGTCAGGACACTATTGGAAATGGTAAAGCAGGAAATAAAGCTCAATGCCTAAGCAGTGCAGCTAGAGCATTGAAGGATGGGAAGAATGTATTTATTGACAGGTGCAATCTTGACAGAGAACAGCGCTCAGATTTTATAAAGCTTAGTGGTGAACCCCAAATAGATATCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTGTGTATTTCTCGATCTGTCAAACGATCTGAGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAATAAAGAACTGCCCAAATTAAGTGAAGGTTTTAACCGAATAACATTTTGTCAGAGTGAGAGTGATGTCAAAAATGCTATTGATACATATGGAAAACTTGGGCTGCGGGCTAACCTTCCACATGGCTGCTTTGGTCAGAAAAATCCGGATTCCAAAATTCAAGTTAGTATAATGAAATTCCTAAAAAAGGTAGAGGTTCCAGTTGATACTGCATCTAGAAAGAATGGCATTGGAGACTCTAGTTCCCAGACTCCTGGGAAAAATGATTCCCGCTGCAAAGATACAGAAAAAAATTCCTCAACACAAGATAATTCCAACTTTGGGCCAAATGAAGTAGAAGGCCAGGCTGATAACTCTGCTGGTTCCTATCACAATCGAGTTTCTCTCGATGATACTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTTCAATTCAACCATGACAAGGCAGCTGATATTATTGTTGAGAAGGTCAGCGAGTACTCAAATAAGATAGGGAATGCCAGACTTGTTCTAGTAGACTTGACTCACAAGTCAAAAATTATGTCTTTAGTTAAAGCTAAAGCAGCAGAAAAGAATGTTGACACCCAAAAGTTTTTTACCCATGTTGGAGATATTACTCGCCTTCATTCCACAGGTGGTTTGCGCTGTAGTGTCATAGCTAATGCTGCCAACTGGCGGTTAAAACCTGGTGGTGGAGGTGTTAATGCAGCAATTTTTGATGCTGCGGGTCCTGAACTGGAGTCTGCAACTAAAGAAAACGTTAAGACGCTTTCACCTGGGAATGCTGTTGTTGTCCCTCTACCATCGTCTTCTCCATTGTTCACCAGAGAAGGTGTAAGCCATGTAATACATGTCCTTGGACCTAATATGAATCCACATAGACCAAATTGTCTCAACAATGATTATGAAAAAGGCTGCAGAATTCTCAAAGAGGCTTATGCATCACTATTTGAAGGTTTTGCATCAATTGTTAGGAATCAGACACAACAAAATGAAAATCTGGGAAAAAAGTATTTGGAGTTACCTTATCAGTCTGAATTCCGTTCCAAAAATCATTTCACAAATACTGATCAAAAGAGTAAGAGAAATGCTGATCATGGATTAGAAAAAAATAAGAAATACAAGGGAACTCAAGATGGTGTTGGATTGACCTTTACAGATTGTAGGGGTGAAAACATAGATTCGGAGATTAAAAGAGCTGACCCGAGAACGGGGAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCACAAGGATGACTTGCTTGAAATTTTAGAAGACGCTGTTGTATTAAATGATATGTATCCTAAGGCCCAGAAGCATGTTCTGGTGTTGGCAAGGACTAGAGGTCTTGATTCCCTATCAGATGTCCAAAATGAGCACCTTTCGATATTGAAAAGAATGCATGCAGTGGGTTTAAAATGGGCTGAAAAATTCTTGAGCGAGAGTGCCTCACTAGTATTTCGCCTTGGATATCACTCGGCTCCGTCAATGCGACAACTACATTTACATGTTATTAGTCAGGACTTTGAATCGAAACATTTGAAGAATAAGAAGCACTGGAATTCATTTAACACTGCTTTCTTTCGTGACTCGGTAGATGTAATTGACGAGGTCTCCAATCATGGAAAAGTGACATTGAAAGATGATGACAAGCTAACGTCTATGGAGTTGAGGTGCCACAGATGTAAAAGTGCGCATCCAAATATACCCCGGTTAAAATCACATATTAGCAGCTGCCAAGCACCCTTTCCTGCTTACCTACTCGAAAATGGGTGTTTGGTTGGTACGTGCACCAGGTAG 2256 0.4091 MDTDFDETKDGKLVLVILVGAPGSGKSTFCEDVMRSSSRPWIRICQDTIGNGKAGNKAQCLSSAARALKDGKNVFIDRCNLDREQRSDFIKLSGEPQIDIHAVVLDLPAKLCISRSVKRSEHEGNLQGGKAAAVVNRMLQNKELPKLSEGFNRITFCQSESDVKNAIDTYGKLGLRANLPHGCFGQKNPDSKIQVSIMKFLKKVEVPVDTASRKNGIGDSSSQTPGKNDSRCKDTEKNSSTQDNSNFGPNEVEGQADNSAGSYHNRVSLDDTPTLAFPSISTSDFQFNHDKAADIIVEKVSEYSNKIGNARLVLVDLTHKSKIMSLVKAKAAEKNVDTQKFFTHVGDITRLHSTGGLRCSVIANAANWRLKPGGGGVNAAIFDAAGPELESATKENVKTLSPGNAVVVPLPSSSPLFTREGVSHVIHVLGPNMNPHRPNCLNNDYEKGCRILKEAYASLFEGFASIVRNQTQQNENLGKKYLELPYQSEFRSKNHFTNTDQKSKRNADHGLEKNKKYKGTQDGVGLTFTDCRGENIDSEIKRADPRTGKAWGSWAQALHQIAMHPEKHKDDLLEILEDAVVLNDMYPKAQKHVLVLARTRGLDSLSDVQNEHLSILKRMHAVGLKWAEKFLSESASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDVIDEVSNHGKVTLKDDDKLTSMELRCHRCKSAHPNIPRLKSHISSCQAPFPAYLLENGCLVGTCTR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03578 751 Pfam AAA domain 15 143 - -
Car04g03578 751 MobiDBLite consensus disorder prediction 214 228 - -
Car04g03578 751 Pfam Macro domain 363 436 IPR002589 -
Car04g03578 751 MobiDBLite consensus disorder prediction 211 267 - -
Car04g03578 751 ProSiteProfiles Macro domain profile. 328 525 IPR002589 -
Car04g03578 751 Gene3D Leucine Aminopeptidase, subunit E, domain 1 314 467 IPR043472 -
Car04g03578 751 MobiDBLite consensus disorder prediction 492 518 - -
Car04g03578 751 MobiDBLite consensus disorder prediction 239 267 - -
Car04g03578 751 MobiDBLite consensus disorder prediction 495 518 - -
Car04g03578 751 Pfam C2HE / C2H2 / C2HC zinc-binding finger 676 729 IPR032566 -
Car04g03578 751 ProSitePatterns HIT domain signature. 640 658 IPR019808 -
Car04g03578 751 Gene3D - 553 734 IPR036265 -
Car04g03578 751 Gene3D - 2 170 IPR027417 -
Car04g03578 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 158 IPR027417 -
Car04g03578 751 PANTHER APRATAXIN-RELATED 14 748 - -
Car04g03578 751 SMART YBR022w_8 340 475 IPR002589 -
Car04g03578 751 Pfam Scavenger mRNA decapping enzyme C-term binding 559 671 - -
Car04g03578 751 SUPERFAMILY HIT-like 549 715 IPR036265 -
Car04g03578 751 SUPERFAMILY Macro domain-like 323 461 IPR043472 -
Car04g03578 751 PANTHER APRATAXIN 14 748 IPR026963 GO:0003677|GO:0006281|GO:0033699
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03578 Car-Chr4 64972247 64976446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03578 7 747 C2H2 Transcription Factor Family AT5G01310 57.143 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03578 K10863 - gmx:100786762 1173.69