Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03555 ATGGCAGGGTTTTTCTCTCTaagtagcggaagaggcaaagaagaagtaagagaagaagaagaaaataataataacaacaacaataacaaTCTTTTCAGAAACGAAGAGATCTACAACAAAGGATTCGAAATATGGCCACAACAGCAACACTCCTCTTTTCACCATCACCATCAACATCAACATCACCAAAACCTTAACAACTTTTACACCTTTGGTGTTGGTAGTAGTAGCactacgaatcgacgaaacaacgacaacaacaacataaacgacgacGTCGTTTCCGTTTCATTCTCTGATGAATCAACGAGATTTGGATTAACGGTGATGAGACCTGGTGTTGGTTTAAGTGGCGGTGGAATGAATTGTCAAGATTGTGGTAACCAAGCGAAGAAGGATTGTCCACATCTTAGATGCAGAACTTGTTGTAAGAGTAGAGGGTTTCAATGTTCAACTCATGTTAAAAGTACTTGGGTTCCCGCTGCTAAACGCCGTGAACGACAACAGCAACTCACTGCGTTGcaacaacaaaatcaacaacagcaacaGTTTCATTCCTCTAGACGACACAGAGAAACTCAAACTGCTGTCGTTTCTGCTTCTCTTGCTTCTACTCCACTACCTATCACTACCACAGGGTTAGAAGTGGGGAATTTTCCACCGGAGTTAAATTCTCCAGCGGTATTTCGGTGTGTGAAAGTGAGTGCAATGGATGCACAAGATGAACGTTACGCTTATCAAACAGCTGTTAACATAGGAGGACGTGTTTTCAAAGGAATTTTGTATGATCAAGGTCTTGAAGGTAATTACACTAGTGCACAtggtggtggtgctggtgaaggttcttccggtggtggtgAAGGACAACAACAAAATCTCTTAACCACTGCTACAACAAGTGTTAACAATCCATTTGAGTATTCATCACTATATCCAGCTCCGCTTAATGCTTTCATGGCTGGTACGCAATTTTTCCCACCTCCAAGATCCTAA 993 0.3444 MAGFFSLSSGRGKEEVREEEENNNNNNNNNLFRNEEIYNKGFEIWPQQQHSSFHHHHQHQHHQNLNNFYTFGVGSSSTTNRRNNDNNNINDDVVSVSFSDESTRFGLTVMRPGVGLSGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLTALQQQNQQQQQFHSSRRHRETQTAVVSASLASTPLPITTTGLEVGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLEGNYTSAHGGGAGEGSSGGGEGQQQNLLTTATTSVNNPFEYSSLYPAPLNAFMAGTQFFPPPRS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03555 330 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 328 - -
Car04g03555 330 Pfam Domain of unknown function (DUF702) 120 267 - -
Car04g03555 330 MobiDBLite consensus disorder prediction 178 199 - -
Car04g03555 330 MobiDBLite consensus disorder prediction 1 31 - -
Car04g03555 330 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 219 266 IPR006511 -
Car04g03555 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 328 IPR007818 GO:0003700|GO:0006355
Car04g03555 330 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 122 164 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03555 Car-Chr4 64697008 64698615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03555 1 330 C2H2 Transcription Factor Family AT1G75520 45.278 7.30e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Car04g03555 DUF702 1.2e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03555 - - gmx:100794846 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03555 04 64697008 64698615 Car04g03555 04 64697008 64698615 ECH
Car04g03555 04 64697008 64698615 Car05g03244 05 77200838 77202261 PCT