Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03530 ATGTACATGTTACTAATAATTTCAGTCACAGAGACATTAAATTCAGAGTTATGGCATGCTTGTGCTGGCCCACTTGTATCCTTGCCTCATGTAGACAGTCCGGTGTATTACTTCCCTCAAGGCCAAATCGAACAGGGGGCTGCTCCCACCACAAGGATTCCCAACTATCCCAATCTTCCATCTCAGTTGCTGTGCCAAGTCCAAAACCTCACACTTCATGCCGACAAAGAAACAGAAGAAATCTATGCACAAATGACCCTCCAACCATTGCATCATGATGTATTCATTGAGGTCAATAATCTATCTCCTTTACCTTCGGTTGGGTTAAAGGCCAATGCTAGCAAGCATCTCTTCTGCAAAACTTTAACTGCTAGTGACACCAGCAAACGCAGTGGCAGCTTAGTGGTGCCACAGACGGCAACAAAGGACCTCTTTCCACCCCTGGATTACACAGTTCAACCAACAATTCAGACTCTTATTTTCCGAGATTTGCATGGTAGCCCGAAGAGGCACGTTCTCGGTAAATGTTGGAGTGATTTTGTTAAATCAAAAAGGCTTAAAGCAGGAGATTCTGTTATTTTTATCCGGGATGAGAAATCACAATTGCTAGTTAGGGTCAGGTATGCTGATAGTCAACACTCATCACATCCATCGTCAATCCTTTTTGCTGATAATATGCACATTGATGTGCTTGCTGCTGCTGCTAATAGAAGTCCATGGACCGTTGTATACAATCCAAGAGCATGCACTTCAGAATTTGTTATTCCACTTGTTAAATACAACAAAGCTTTACGTACGCCTGAACTGTCAATTGGCTTGAGATTTGGTATGATGTTTGAGACAGAAGAATTTGGTACGCGCAGATATTTGGGTACAATAGTCGGCAtcagtgatttggatcctctaatgtggcctattgATGTCAAAGAAAGAACAAATAATGATATAGGAGGAGTGGAGACACTCTGTAGTCCCCTTTATCAGCCAGAACTCCTAGAAGGCGTGCGTGCGTGCGTGCAGGCAATTTTTGAGTATAAATACAGCATACTACAACCTAAGAATTGCAAAAGTGAAAGAAAAACAAAAAACAAGAGACAATTGAATATGTCTTCCAAAAACAAAGACTCGGGTTCCAAATATGATGAATCTGATACCGAATATAATCGGATTCTTGACTTGGCAATCTTGAAAGGAATTTGCAGAGACGAGTGCTATGACTTCGGCCGTGACAATGTTGAGAGTGACAGTGACGATGAAATTATCAACAATGAAGAGAACAAAGAAATTGTTAACCTCAGCAATGAAGATGACAACAAGAAGGACGATGGCACCACCAAGAACGGGAGCAAGGCAGTATCAACAACATCGGACCATTAA 1377 0.4081 MYMLLIISVTETLNSELWHACAGPLVSLPHVDSPVYYFPQGQIEQGAAPTTRIPNYPNLPSQLLCQVQNLTLHADKETEEIYAQMTLQPLHHDVFIEVNNLSPLPSVGLKANASKHLFCKTLTASDTSKRSGSLVVPQTATKDLFPPLDYTVQPTIQTLIFRDLHGSPKRHVLGKCWSDFVKSKRLKAGDSVIFIRDEKSQLLVRVRYADSQHSSHPSSILFADNMHIDVLAAAANRSPWTVVYNPRACTSEFVIPLVKYNKALRTPELSIGLRFGMMFETEEFGTRRYLGTIVGISDLDPLMWPIDVKERTNNDIGGVETLCSPLYQPELLEGVRACVQAIFEYKYSILQPKNCKSERKTKNKRQLNMSSKNKDSGSKYDESDTEYNRILDLAILKGICRDECYDFGRDNVESDSDDEIINNEENKEIVNLSNEDDNKKDDGTTKNGSKAVSTTSDH 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03530 458 ProSiteProfiles B3 DNA-binding domain profile. 174 210 IPR003340 GO:0003677
Car04g03530 458 SUPERFAMILY DNA-binding pseudobarrel domain 115 211 IPR015300 -
Car04g03530 458 PANTHER AUXIN RESPONSE FACTOR 5 8 305 - -
Car04g03530 458 Coils Coil 422 442 - -
Car04g03530 458 Pfam Auxin response factor 232 305 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car04g03530 458 MobiDBLite consensus disorder prediction 359 383 - -
Car04g03530 458 CDD B3_DNA 116 207 IPR003340 GO:0003677
Car04g03530 458 MobiDBLite consensus disorder prediction 423 446 - -
Car04g03530 458 Gene3D - 115 208 IPR015300 -
Car04g03530 458 Pfam B3 DNA binding domain 118 207 IPR003340 GO:0003677
Car04g03530 458 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 305 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car04g03530 458 MobiDBLite consensus disorder prediction 415 458 - -
Car04g03530 458 SMART B3_2 118 210 IPR003340 GO:0003677
Car04g03530 458 Gene3D - 268 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03530 Car-Chr4 64454165 64460108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03530 13 305 B3 DNA Binding Superfamily AT1G19850 61.006 8.29e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car04g03530 B3 1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03530 K14486 - mnt:21388604 374.785