Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03484 ATGGCAAGTGGGTTTGGGGAATCAACAAGTAGGTCACCCCCAAGCCCTCCCTACTCAAGCAACAATAATAACAATGATGCTGGAAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGATCCTATAATTACTTTGTGCGGTCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGGGAATGTCCGGTGTGTAAGGCAATGATTGAGGAGGAGAAGTTAGTTCCTTTATATGGGAGAGGAAAGACATCAACTGATCCGAGATCGAAGTCTATTCCTGGTGTTAATATCCCTCATCGTCCTGCCGGTCAGAGACCGGAGACTGCTCCTCCACCCGAATCAAATCCTTTTTCTCAACATGGATTTGGATTCACAGGTGGATTGGGAGGATTTGCTCCAGCAGCAACTGCAAGGTTTGGGAATTTCACATTTTCTGCAGGATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGTTGCATGGATTTCACGGTGGGGCCATGTATGGTGGAGCCGCTGGTTTCCCTTATGGGTTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCTTCACACAGGTCAAGGCCAACAAGATTATTATCTGAAGAGGCTGCTGATGTTTGTTATTTTTTGTGTGGTACTTGCTTTTATTTGGCAATAG 690 0.4333 MASGFGESTSRSPPSPPYSSNNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFTGGLGGFAPAATARFGNFTFSAGFGGFIPSLFNFQLHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPLHTGQGQQDYYLKRLLMFVIFCVVLAFIWQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03484 229 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Car04g03484 229 MobiDBLite consensus disorder prediction 86 123 - -
Car04g03484 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Car04g03484 229 CDD RING-HC_AtRMA_like 30 74 - -
Car04g03484 229 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 - -
Car04g03484 229 MobiDBLite consensus disorder prediction 1 22 - -
Car04g03484 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 86 IPR013083 -
Car04g03484 229 PANTHER OS12G0636000 PROTEIN 2 229 - -
Car04g03484 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car04g03484 229 SUPERFAMILY RING/U-box 29 85 - -
Car04g03484 229 SMART ring_2 32 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03484 Car-Chr4 63983215 63985007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03484 30 212 C3H Transcription Factor Family AT1G19310 69.430 1.34e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03484 K10666 - gmx:100527488 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03484 04 63983215 63985007 Car08g00562 08 4761122 4763664 ECH
Car04g03484 04 63983215 63985007 Car04g03484 04 63983215 63985007 ECH