Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03471 ATGGGAAGTGGTTGCAGATCGTGGGAAGAAAACATTTACTGGACCCATTTTCAATTCGTCCATTTCACCCAGTTTCTACACAAAGATTATCATcaacaacttGAACTTCCCAAAACATTTTCGGACAATGTAAAAAAGAAGTTGCCGGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTATGTGGGATATAGGGCTGACAACTAGAGATGGTATGGCTTACTTCACAAATGGTTGGCAACAATTTGTGAAAGATCACTCTTTGAAAGAGAACGATTTTCTTGTCTTTAAGTACAACGGTGAATCACTGTTCGAGGTTTTGATATTTGATGGGGAGAGTTTCTGTGAGAAGGCAGGTCCTTATTTTGTTCGGAAATGCGGGCAGGCCGCCGCCCAAACCGAACAAGGTGGTGGATGTTCTAGTAAGAGAAGGGAAACAGATAATTCTGTTGAAGAAGTCAATACTCCTTCTAATGGTGGTGATGAAGGTGATTCGCCTGAGAAATCTGCACATCTTAACGGTATCCAAGTGCCGTTTGTTGCACCTTCTAACACTCCCAATGGAAAGACTTCTAATGCTGGTGTTGAATCTTCCGGCCCCGAGCAGGAAATGGAGGATGCAGTCAATGAGACCGACCCTACAGCTGATCCCTCCCAAACAAATGGCAAACGGGTAAGGAAATCTGTTTATGCCGCCACACCTGTTCAGATTAAGCGGAGAGGAAGACCACCAAAACCTTCTAATTCTCAAGGGAGAGCACTTAATTGGGTTGCTGATGCTGAACATTCTCCAAAGTGTAGATCAGGGACATGTGAATTGTATACCTCAAATAGAAGGCCTGTCACACAAAATGAGATAGAAAATACCCTTCTGTTAGCTCAGGCAGCGTGCACCAACGAATGTTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTACGTGTCATTCCCTAATAAGTGGATACTAAGCTATATTTCTCCATCATCTCAAGAAGTGATATTGCGCATGGGCGAGGGTGAATGGATTGCGAAATACTGCTACCATAATATCCGTAACAATGGAGGCCTCACCGGTGGGTGGAAATATTTTGCCCTCGACAATAACTTGGAAGAGTTTGATGTGTGTTTGTTTAAACCAAGTGGCCATTTGATGGATAGATTGATAATTGAAATGAGCATTTTCAGAGTTGTTGAGGAGATTACTCCTCTAACTGCAATGAGTTCTCCCGGAAGGAAGAGAGGTGTTAAGAGAAGAGTGACTAGTTCCGTCCAAACAGAACTCGAGTCCATTGAAGGTGCATGA 1311 0.4287 MGSGCRSWEENIYWTHFQFVHFTQFLHKDYHQQLELPKTFSDNVKKKLPENVTLKGPSGVMWDIGLTTRDGMAYFTNGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAGPYFVRKCGQAAAQTEQGGGCSSKRRETDNSVEEVNTPSNGGDEGDSPEKSAHLNGIQVPFVAPSNTPNGKTSNAGVESSGPEQEMEDAVNETDPTADPSQTNGKRVRKSVYAATPVQIKRRGRPPKPSNSQGRALNWVADAEHSPKCRSGTCELYTSNRRPVTQNEIENTLLLAQAACTNECLLVTMRPSHVYKRFYVSFPNKWILSYISPSSQEVILRMGEGEWIAKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPSGHLMDRLIIEMSIFRVVEEITPLTAMSSPGRKRGVKRRVTSSVQTELESIEGA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03471 436 Gene3D - 15 115 IPR015300 -
Car04g03471 436 CDD B3_DNA 21 110 IPR003340 GO:0003677
Car04g03471 436 ProSiteProfiles B3 DNA-binding domain profile. 302 400 IPR003340 GO:0003677
Car04g03471 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 180 IPR044837 -
Car04g03471 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 273 410 IPR044837 -
Car04g03471 436 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Car04g03471 436 CDD B3_DNA 301 384 IPR003340 GO:0003677
Car04g03471 436 Pfam B3 DNA binding domain 27 110 IPR003340 GO:0003677
Car04g03471 436 Pfam B3 DNA binding domain 304 388 IPR003340 GO:0003677
Car04g03471 436 MobiDBLite consensus disorder prediction 178 198 - -
Car04g03471 436 SMART B3_2 302 400 IPR003340 GO:0003677
Car04g03471 436 SMART B3_2 19 112 IPR003340 GO:0003677
Car04g03471 436 SUPERFAMILY DNA-binding pseudobarrel domain 300 385 IPR015300 -
Car04g03471 436 MobiDBLite consensus disorder prediction 212 226 - -
Car04g03471 436 Gene3D - 281 402 IPR015300 -
Car04g03471 436 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 273 410 - -
Car04g03471 436 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 4 180 - -
Car04g03471 436 SUPERFAMILY DNA-binding pseudobarrel domain 17 110 IPR015300 -
Car04g03471 436 MobiDBLite consensus disorder prediction 132 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03471 Car-Chr4 63753029 63756230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03471 5 398 REM Transcription Factor Family AT4G33280 34.739 7.05e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g03471 B3 4.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03471 - - mtr:MTR_1g021500 601.282