Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03470 ATGGCGTGTGATTGTAAAGGAAAGTTAAATGTGAGAAGACCTCACTTCTATGAGGTGTATTCTCTTGCTTCTAGCTCTGAAACTATGAGGATTCCAGATGGTTTCATTTGTCAAATGGAGGGAAGGACATGCGGATTAGTTTCATTAACAGGTCCAAGTGGAAACACTTGGCAAGTCCGTTTAGTTGAGCAGAACAATTATCTATTCTTCCATCATGGATGGTCAACATTTGTGGGAGATCATAATTTAAAATATGGCGACCTTTTGGTTTTCAGATACGAGGGTCAGCTGCATTTCACTGTGCAAGTATTTGGTGAGAATGCATGCGAGAAAGAAGCAGCATTTCATTCTGAATGCAATCTAAATTCATTTAACTTCGATAATATTAAAGGACAGAAAAGTGATGCTATGGAGAGTTCTTCTTTGGATGTTGTCGGAGGTGATCAGAGGAAAATGAGATGCGACACCATTGAAAACCAGGAGCTTGCTCTGGGTATTGCTGGTAGAGATCTATCCAAGTATGAGGTAGTTAAACCAATTAGTATTATCAGAGAAATAGAAGAAACATACAAAGAATGTTCAACTAGTGCTGTCCCTGTTCCTTTTCACCCAGCAAATATCAATGAAGATGAAGAGGCAGCCATCTTGTATAGAAGTGGGAAGGAAGATGATCATTATATTGTCAGCGGAGCTTCAATGTCAAAGTTATCAGCACATGATGAGAAAAAGATAGCCCAGTCATTTACCTCCTCTTTTCCATATTTTGTGAAAATAATTAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATACCGTATCAATTTTCGATGTCACATTTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCCGTTCCAACAACTAGAGTGCATACAAGTCACACTCTTTGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAACATAAAGGTTGGAGATGTTTGCATTTTCGAACTTATACGCGAGTGTGAATTACGTGTTCGCGTTGCTGAGGTTGGAAAAGATGGGCTGGACTGCCAGGTTGGAAAACTAGCTTTTAGTATGCTTAGTACAGGGCATGATGTCGCTTGCAATAAGACTTCCAAATATAAGCCAAAGAATCCTAAAGTCAGCTCAAAGTGCAGAAACAAAGTTGATCTATTTGATAAAAAAATTTCAAAGATCGGTCAAGAAGCTGTTTTATCCATTGACTTAAAAACATCTGGTAGAGCTTCAAATACTTCGAAGAAGATGGGGCTTTGTCCCCAATCGAAAGCTTCCCATAAAAAGTTGGCTGTATCAAGGAGACATCGTGTGGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGACGAACAAAGAGTAGCTCAAGCTTTTTCATCCCCATTTCCTAATTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATATCAGTTCTCTGCTGCACATCTCCCCTCATACAAAACAGAAGTTACGCTTCGCAATTCAAAAGGCCAATGTTGGACTGTGAACTCTGTCCCAGACGCTAAAGGGAGAACAATTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGGGATACTTGCATTTTTGAGCTTGTTTCTCATTATGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGTCTTGATGATCAAAATGGTCTTGTGAAACTTAACGGCTAG 1788 0.3932 MACDCKGKLNVRRPHFYEVYSLASSSETMRIPDGFICQMEGRTCGLVSLTGPSGNTWQVRLVEQNNYLFFHHGWSTFVGDHNLKYGDLLVFRYEGQLHFTVQVFGENACEKEAAFHSECNLNSFNFDNIKGQKSDAMESSSLDVVGGDQRKMRCDTIENQELALGIAGRDLSKYEVVKPISIIREIEETYKECSTSAVPVPFHPANINEDEEAAILYRSGKEDDHYIVSGASMSKLSAHDEKKIAQSFTSSFPYFVKIIKSFNVSGSYTLNIPYQFSMSHFPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELIRECELRVRVAEVGKDGLDCQVGKLAFSMLSTGHDVACNKTSKYKPKNPKVSSKCRNKVDLFDKKISKIGQEAVLSIDLKTSGRASNTSKKMGLCPQSKASHKKLAVSRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFSSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVTLRNSKGQCWTVNSVPDAKGRTIHTFCGGWMAFVRDNDINFGDTCIFELVSHYEMQVYISGVGKEGLDDQNGLVKLNG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03470 595 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 458 - -
Car04g03470 595 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 459 590 - -
Car04g03470 595 SUPERFAMILY DNA-binding pseudobarrel domain 248 348 IPR015300 -
Car04g03470 595 ProSiteProfiles B3 DNA-binding domain profile. 255 351 IPR003340 GO:0003677
Car04g03470 595 CDD B3_DNA 253 347 IPR003340 GO:0003677
Car04g03470 595 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Car04g03470 595 SUPERFAMILY DNA-binding pseudobarrel domain 477 578 IPR015300 -
Car04g03470 595 CDD B3_DNA 21 104 IPR003340 GO:0003677
Car04g03470 595 Gene3D - 8 109 IPR015300 -
Car04g03470 595 Pfam B3 DNA binding domain 24 105 IPR003340 GO:0003677
Car04g03470 595 Pfam B3 DNA binding domain 255 346 IPR003340 GO:0003677
Car04g03470 595 Pfam B3 DNA binding domain 484 570 IPR003340 GO:0003677
Car04g03470 595 ProSiteProfiles B3 DNA-binding domain profile. 484 580 IPR003340 GO:0003677
Car04g03470 595 Gene3D - 469 579 IPR015300 -
Car04g03470 595 Gene3D - 235 351 IPR015300 -
Car04g03470 595 SMART B3_2 484 580 IPR003340 GO:0003677
Car04g03470 595 SMART B3_2 17 107 IPR003340 GO:0003677
Car04g03470 595 SMART B3_2 255 351 IPR003340 GO:0003677
Car04g03470 595 CDD B3_DNA 482 576 IPR003340 GO:0003677
Car04g03470 595 SUPERFAMILY DNA-binding pseudobarrel domain 23 112 IPR015300 -
Car04g03470 595 PANTHER B3 DOMAIN-CONTAINING 459 590 - -
Car04g03470 595 PANTHER B3 DOMAIN-CONTAINING 1 458 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03470 13 347 B3 DNA Binding Superfamily AT3G18990 22.923 2.96e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g03470 B3 2.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03470 - - gmx:100814386 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03470 04 63737449 63742782 Car04g03470 04 63737449 63742782 ECH