LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g03421	ATGCGTGGATTGCAAAAATCGAAAAGAGTTTCATGGCCCAACGATTTAGATCTTTGTCAGGTTAAGTTATTCTTATCAGAGGAATCTCCTTCACAAGTTGGGTTAAATTCTCAAGATCACCTCCAAGCAAAGGCATCATTGTTGTTGCATCAAGGCGGAGCAAGTTCTGATGATACTTTACCTCCTGGATTTGAGGGAAATCATGCTTCAAGTCAGTTTGACATTAAGCTGTCCCAAATACCCGTTATTAGGTGGATTAATCCACCTAAGATTGTGCTAGATCTCACCTGGCAAGTGGTGGCTGGGGAAGAAAGCAAAGAGATAAGGGATCAATATCATAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGCATATCTTCCATTCCACCAAATCCTTCAGTTACAGTGGATGTTGAAGAATCCCATTACATTGATGGTCAAACTGTTGTGATCCCAATTACGCCTTTTGAAGACGGAGATGTGGCAGCAGATACATCATCCCATTCCTCGAAACAATATGGTGTTTCACAATCTCATGAATTATCTCCTGGTATATTGGAGGGTTCTAACTCTGCTACAAGTATGCCGATAACTCGTGGCCTAGTGTCGGATGTAGCTGCTGCATCTGTTGCTTTAACTAGCATAGTGAAGAGCAGTGAACATGGTAATTTGATTGACCGTGAATTACTCAATAATATTCTCAACAATCCTGAAGTGATTGAGAAATTGGTTCGAGATTATGGAGTTAATAATAATGCACAGTATGTACAAAACGTGGGATCATCTTCAGGATTTTTTCCACATCCTCCAAACATGGGATCATCTTCAGGATTTTTTCCACATCCTCCGAATCCCATTAATCAAGTTGAAACCACTACAACCTCATCAAATGCGTTTTCATCCACTTTCTATTCCCACACAACTGGAGGTCAAATGGCAGCTATTTCTACTCAATGGCATCCTAGGCCTGCAATGAGTTCAGCTATTGCTGCAACTCCTGTTGAGGCCCCATCAACAAAAGATGTAAACTACTATAAGAGCTTAATTCAACAACATGGAGGAGATAAACAAGAAGTACTTCCATACTCCTCCGGTAATCGTCAGAACCAGCAACAGTTAACAAATTATGAGACAACACATAATCTTAGAGGAAAAGTGTCGAAACCAAAGATAATGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAACTGTGCATATCAACATGATGCATCATTTCAGCCACAAGGTAATCCGGTTTCAGGGATACAAAGTTCGAAGAGAATGAAAATGGATAATGAGATAAGCAGTTAA	1332	0.4024	MRGLQKSKRVSWPNDLDLCQVKLFLSEESPSQVGLNSQDHLQAKASLLLHQGGASSDDTLPPGFEGNHASSQFDIKLSQIPVIRWINPPKIVLDLTWQVVAGEESKEIRDQYHREMRVLEAIYPRISSIPPNPSVTVDVEESHYIDGQTVVIPITPFEDGDVAADTSSHSSKQYGVSQSHELSPGILEGSNSATSMPITRGLVSDVAAASVALTSIVKSSEHGNLIDRELLNNILNNPEVIEKLVRDYGVNNNAQYVQNVGSSSGFFPHPPNMGSSSGFFPHPPNPINQVETTTTSSNAFSSTFYSHTTGGQMAAISTQWHPRPAMSSAIAATPVEAPSTKDVNYYKSLIQQHGGDKQEVLPYSSGNRQNQQQLTNYETTHNLRGKVSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPQGNPVSGIQSSKRMKMDNEISS	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g03421	443	ProSiteProfiles	Zinc finger C3H1-type profile.	390	418	IPR000571	GO:0046872
	Car04g03421	443	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6	1	438	-	-
	Car04g03421	443	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED	1	438	-	-
	Car04g03421	443	MobiDBLite	consensus disorder prediction	421	443	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g03421	Car-Chr4	62897832	62902664	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Car04g03421		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g03421	-		-	cam:101501814	879.011