Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03402 ATGCAGAGATCACTATGGTTGCATCAATATTCTCCTCTTACAACATACCAATCTTTAATCCATCCAATTCCAACACACTACTATACTCGATGCCAACACATTTGGCCGTTATTTCTTGCTACTCTCTCCATTTATTTTTTTTCAGCTAGTCTTTTATATGGTTTTTATGGTGATTCTCGCTTGATTCTTGGTCCTAGCTCATCACGTTTGATCAAAACAAGTTCACTTTTTGTGAAACAAATTGAAGTAACAAATGAGTatactaataataataataataatgatgatgatgatGTTCATCTTTATGGCTTCAATGAGAAACCAGAGTTAAGTTCTCAAATAAATTGGACTACATCAAAGTTCCTACTTGTTGAACCATATAGTCGCAAGGGAATTTCTCTGTGGTTAAATAAAGGTTCCACTATTTGTTTGAGGTGGGAAGCAGAGGCTAGTAGTTTAAATCAGCTTGAAGGCATAGTGATTAAAGGAGAAAGGAGGTTAGAAAAACTAAAGCCTAGACAAATGATTGAGGCAACAACAATTGATGTTAGGGAGACTGAGAATGGTGGTAAAGTAGCTGAATACATGGTTGAGGAAGATGATAGATACCACATTGGAGTTCTAAACATGAATCCTAGGAACACAATCTCGACCATGAATATCAATGTTTCTGCAAAGGTATATGATACTACCAAAGCCAAGAATATGTGTTCAACTAGGAATGGATCGTGCAAACTTGGCCTTTTTTTCCCTACCACATATTATGTGATTCTATCAACACCAAAAAATGGAGATGATGATGATGATGGGGGAATGTTTGTTGACATTGCTTTTATGGCTCGTGTTTTTGCCTACATAATTCTTTTAGCCGGTAATGGTGATAACGAAAATGTAGTTGCAACACAAGAAGTAACTGAAACTGAACCACTCACACGTGTGCAGTCAAATCCAATGACATATGGAACAATTAACAAATTTCATATGGAAGAATCAGATGGTTCAAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTATGTGTAATTTGTTATGATGAACAACGTAACTGTTTCTTTGTTCCTTGTGGTCATTGTGCTACTTGCTATGACTGTGCACAAAGGATTGTGGTTGGGGAGAGCAAAGTTTGTCCAGTATGTCGGAGACTTATTCATAAAGTACGAAAACTATATAATAGTTAG 1200 0.3542 MQRSLWLHQYSPLTTYQSLIHPIPTHYYTRCQHIWPLFLATLSIYFFSASLLYGFYGDSRLILGPSSSRLIKTSSLFVKQIEVTNEYTNNNNNNDDDDVHLYGFNEKPELSSQINWTTSKFLLVEPYSRKGISLWLNKGSTICLRWEAEASSLNQLEGIVIKGERRLEKLKPRQMIEATTIDVRETENGGKVAEYMVEEDDRYHIGVLNMNPRNTISTMNINVSAKVYDTTKAKNMCSTRNGSCKLGLFFPTTYYVILSTPKNGDDDDDGGMFVDIAFMARVFAYIILLAGNGDNENVVATQEVTETEPLTRVQSNPMTYGTINKFHMEESDGSSSSSEELYDEKLCVICYDEQRNCFFVPCGHCATCYDCAQRIVVGESKVCPVCRRLIHKVRKLYNS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03402 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 399 IPR013083 -
Car04g03402 399 ProSiteProfiles Zinc finger RING-type profile. 347 387 IPR001841 -
Car04g03402 399 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 30 397 - -
Car04g03402 399 SUPERFAMILY RING/U-box 336 393 - -
Car04g03402 399 Pfam Zinc finger, C3HC4 type (RING finger) 344 393 - -
Car04g03402 399 Pfam Domain of unknown function (DUF4792) 100 167 IPR032008 -
Car04g03402 399 Pfam Domain of unknown function (DUF4793) 193 289 IPR032010 -
Car04g03402 399 PANTHER OS05G0521000 PROTEIN 30 397 IPR044586 GO:0004842
Car04g03402 399 SMART ring_2 347 386 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03402 328 397 C3H Transcription Factor Family AT1G62370 35.714 9.27e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03402 - - cam:101496542 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03402 04 62657925 62660337 Car04g03402 04 62657925 62660337 ECH