Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03371 ATGGGTGTAGAATTCAATTCAAAAACGATCACTGTTTCTTTCTCTCTTTCTTTGAACACTAGAAAGGAAAAACCGACAATAGTAAAGGATTTGCAGAGAGGGTGGTACTTGTTAGTTCCAACTTTGCCTCCACCATTAATTTTCATTAGAAACGTCTCTAGAAAAAATAATTATTTGGGGTGTAACAAGAATATTATTTGTGGAAAGTTGGTGAGGTTGAAGGAGGAGTATGATGGTGGTGACGTGGAAGAAGAAGGTTCGGGATCACATGGATTGAATCAACGGCAACATGGGAAGGTGGCAATGTCTTATCCTCTGGTTTCGGCACCGACTCATGATGGATTGGGCCAGGCCCAAAATGAGTGGGTCCAAGTCCAACAAGGTATGATGACAGGTTATGTCCCTGTCTCTACTTCTTCTAATTATTCCCCTCGTTTGTATTCTTCTAGTTCTACTAATTCTAGTTCTAGTTCTAATTCTTGGGTAGTTGGACATAAAAGAGTGCGCGAAGATGATTTTCATAAGACTCGTGAAGTTGCTGCTTCTTCTCATCATCAAGATTTTACCTCAATTCATACAAACGTTGCTGATTTTAGATTACCTTCTTCTCAAGGACCCTCATCATCAGAAAAAACATTGACagaagcaagaagaagagagtcaaatgaagaagaaagtggagagagaagaagaagaTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTAGAGATCCACATAAAGCAGCAAGAGTATGGCTTGGTACATTCGAAACTgctgaagctgcagcaagagcttacgatgaagctgCTTTGAAATTCAGAGGTAGCAGAGCAAAACTCAACTTCCCTGAAAATGTTACTACAACAATTAGCCCCACTTTTCCGCCGAATACTTCTTCAACCGTTTCTGTTAATCCGGCAACTCATTATTCACCTCCACCACCACTTCAGATGCAACAACCACCGTTTACACAGTTTCAAGGTTCTTCTGATTTGTTGACAGATTATTATCAATATTCTCAGATTTTGAAAGGTTCTGCTGATTTTCAAGGACTTGAACAATGGTTTTATGAATCTCAAATGGCAGCTATTCATTCATCTTCTTCAATGTTATTGCCATCTACTGCATTTTCACCGGCTACTCAATTATCCTCTGCTTCGCTTCCTCTGTTTCCTGGTCAGCAAATAGAGTTTTTCCGGCCGCCGGAAGATCACTCTCACGGCGAAGATGTTGGTGGTGGGTCGGGTTTACCACCTTCAACATGGTCAGATACCAGTGGCTATCCTCCTCCTTCGAGTTGA 1320 0.3856 MGVEFNSKTITVSFSLSLNTRKEKPTIVKDLQRGWYLLVPTLPPPLIFIRNVSRKNNYLGCNKNIICGKLVRLKEEYDGGDVEEEGSGSHGLNQRQHGKVAMSYPLVSAPTHDGLGQAQNEWVQVQQGMMTGYVPVSTSSNYSPRLYSSSSTNSSSSSNSWVVGHKRVREDDFHKTREVAASSHHQDFTSIHTNVADFRLPSSQGPSSSEKTLTEARRRESNEEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALKFRGSRAKLNFPENVTTTISPTFPPNTSSTVSVNPATHYSPPPPLQMQQPPFTQFQGSSDLLTDYYQYSQILKGSADFQGLEQWFYESQMAAIHSSSSMLLPSTAFSPATQLSSASLPLFPGQQIEFFRPPEDHSHGEDVGGGSGLPPSTWSDTSGYPPPSS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03371 439 MobiDBLite consensus disorder prediction 424 439 - -
Car04g03371 439 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Car04g03371 439 PRINTS Ethylene responsive element binding protein signature 255 271 IPR001471 GO:0003700|GO:0006355
Car04g03371 439 ProSiteProfiles AP2/ERF domain profile. 232 289 IPR001471 GO:0003700|GO:0006355
Car04g03371 439 MobiDBLite consensus disorder prediction 212 232 - -
Car04g03371 439 CDD AP2 240 291 IPR001471 GO:0003700|GO:0006355
Car04g03371 439 Gene3D AP2/ERF domain 231 291 IPR036955 GO:0003700|GO:0006355
Car04g03371 439 SMART rav1_2 232 295 IPR001471 GO:0003700|GO:0006355
Car04g03371 439 Pfam AP2 domain 232 281 IPR001471 GO:0003700|GO:0006355
Car04g03371 439 MobiDBLite consensus disorder prediction 404 439 - -
Car04g03371 439 SUPERFAMILY DNA-binding domain 232 290 IPR016177 GO:0003677
Car04g03371 439 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 106 392 - -
Car04g03371 439 MobiDBLite consensus disorder prediction 198 238 - -
Car04g03371 439 PANTHER DNA-BINDING DOMAIN 106 392 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03371 Car-Chr4 62232849 62235307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03371 182 300 AP2-EREBP Transcription Factor Family AT5G61890 55.462 1.40e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g03371 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03371 - - lja:Lj5g3v1937400.1 305.834