Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03369 ATGCCATTGTATGAGGATATAAAGATTAATTTTTTGATGGGTCAAGAAACTGATTTCAAAGGTTGTGCTTTTAGTTGTTTAGACACTGAAAAATTGGATCTAAAAATGATGATTTTAGAGCTTCATGATTCATCAATTGATGTTCCTTCAGTGTTCATATGTCCAATTTCACTTGAACCAATGCAACAACCTGTGACCCTTTGTACTGGTCAAACCTATGACAAATCAAACATCCTTAAATGGTTGTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGTTTTATGGGATGATTCAATCACACCCAACAACACACTTAGACACTTAATCTTCACATGGTTCTCAAACAAGTACTTTGCAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGTGTTTTGGAACATTTGGAGACACTTAAAAAGGTAAAGGGTCAAAATAGAGTTAAAGTTCTTAAGGATCTTAGAAAACTTGTTGCTGCTCATGTTTGTGCAAGGACAACAATGTTGGAAAATGGTGGTGTTGGTTTGGTTTCTTCTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGAATAATTGTGAATTTGGATTTGAGTTCAGAATTGAAGAGAAATCTTATGCATCCAGGTAAAGTTTCATTGATAGTTGATATTATGAATGAAGGAACTATTGAAACAAAGATGAATTGTGCTAAGTTGATTGAAGTTTTGTTGATGGAAAATAATGACACTAATAAGATTGAAATTGTGTCAAGTTTGAGTCTTTTGGTTGGATTATTAAGATTAGTGAGAGATAAGAAAAACTCAAATGGAATATTAATTGGACTCAAATTAGTTAAACTTGTTTTATGTTGTGATGAAAAAGTTAGAATTTCTTTGATAAGTATTGGAGCAATTCCTCAATTGATTGAGGTGTTACCAAATTTGAATAATGAGTGTTTGGAAATAGCACTTTATATATTAGAAATGTTGTCAACAATTGAAGAAGGGAAATTGGCTTTGAAAGAATGTCCAAATATAATTCCTAATGTGGTTAAGATGTTGATGAGAGTATCAGAAAATTGTACTCAATTTGCATTGTCAATATTATGGGCTATTTATAAGCTTGCACCTGAAGAATGTGCTTCAAAAGCTGTGGAAGCTGGATTGGCATCAAAATTGTTGTTGGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGATGTCATCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTGATTTCTAATTGTATGCTTACTACTACAATACAATGA 1308 0.3242 MPLYEDIKINFLMGQETDFKGCAFSCLDTEKLDLKMMILELHDSSIDVPSVFICPISLEPMQQPVTLCTGQTYDKSNILKWLSLGHKTCPTTMQVLWDDSITPNNTLRHLIFTWFSNKYFAMKKKLEDVQGSVLEHLETLKKVKGQNRVKVLKDLRKLVAAHVCARTTMLENGGVGLVSSLLGPFTSHVVGCEAIGIIVNLDLSSELKRNLMHPGKVSLIVDIMNEGTIETKMNCAKLIEVLLMENNDTNKIEIVSSLSLLVGLLRLVRDKKNSNGILIGLKLVKLVLCCDEKVRISLISIGAIPQLIEVLPNLNNECLEIALYILEMLSTIEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSTSILISNCMLTTTIQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03369 435 Gene3D - 283 430 IPR011989 -
Car04g03369 435 Pfam U-box domain 48 118 IPR003613 GO:0004842|GO:0016567
Car04g03369 435 PANTHER WDSAM1 PROTEIN 22 434 IPR045185 GO:0061630
Car04g03369 435 ProSiteProfiles U-box domain profile. 47 121 IPR003613 GO:0004842|GO:0016567
Car04g03369 435 Gene3D - 128 282 IPR011989 -
Car04g03369 435 SMART Ubox_2 51 114 IPR003613 GO:0004842|GO:0016567
Car04g03369 435 SUPERFAMILY RING/U-box 41 117 - -
Car04g03369 435 CDD RING-Ubox_PUB 52 94 IPR045210 -
Car04g03369 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 127 IPR013083 -
Car04g03369 435 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 434 - -
Car04g03369 435 SUPERFAMILY ARM repeat 243 418 IPR016024 -
Car04g03369 435 SUPERFAMILY ARM repeat 148 265 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03369 Car-Chr4 62203538 62205260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03369 1 435 U-box Gene Family AT3G49810 56.388 4.23e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03369 - - gmx:100803878 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03369 04 62203538 62205260 Car04g03369 04 62203538 62205260 ECH