Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03345 ATGGATTTTGATTATACCTCCACCATAGAGATTCAACTTGATCTTGGTCTTGCCCTCCATGATCAATATTTACATAAGGATTGTGATGGCCATagaaagaaagaaagcaagaagaaaaaaaTGGAGAATTCATCAAAATGTAATATGGCCTATCCATCTCTTACATTAGGACCACTATATGAGGATGAAAATGTAAATAATCAAGATGAAGCCTCAAAGATTGAATCTTATGATCAAAATTTACATACACAAGTTACTTCTCCAAGCATGGAGTGTTCATTTTCGAACTCGACAAGCATCAAGAGGGAGATTGGTGAGGAATTTGATGTAGAAATAGAGAAGGTTCCAACAAATATGGGAGATCATGTTGATGAAAATGGTAATCCAAGGAAGAAACTAAGGCTCACAAAAGAACAATCAAAAGTGTTAAAGGAAAATTTCAGAGAGCATTCTACTCTTAATCCGAGGCAAAAACAAACATTAGCAAAAGAGCTGAATCTGAGTGATAGGCAAGTAGAGGTGTGGTTTCAAAATCAGAGAGCCAGGAGAAAAGTGAAACAAACGGAATCGGAATGTGAATTACTGAAGAAATGTTGCGAAAGTCTAAGAGAGGAGAAGAAGAAGTTGCAAAAGGAGGTAGAAGAACTTGAGGCAATGCAAACAGTGGCAGCACCTTTTTATATGCAAATTATTCCAGCACCCACACTTACCATTTGCCCTTCGTgtgctagatga 735 0.3551 MDFDYTSTIEIQLDLGLALHDQYLHKDCDGHRKKESKKKKMENSSKCNMAYPSLTLGPLYEDENVNNQDEASKIESYDQNLHTQVTSPSMECSFSNSTSIKREIGEEFDVEIEKVPTNMGDHVDENGNPRKKLRLTKEQSKVLKENFREHSTLNPRQKQTLAKELNLSDRQVEVWFQNQRARRKVKQTESECELLKKCCESLREEKKKLQKEVEELEAMQTVAAPFYMQIIPAPTLTICPSCAR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03345 244 Gene3D - 123 193 - -
Car04g03345 244 SUPERFAMILY Homeodomain-like 120 187 IPR009057 -
Car04g03345 244 CDD homeodomain 129 187 IPR001356 GO:0003677
Car04g03345 244 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Car04g03345 244 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Car04g03345 244 SMART HOX_1 128 190 IPR001356 GO:0003677
Car04g03345 244 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Car04g03345 244 Pfam Homeobox associated leucine zipper 186 219 IPR003106 GO:0006355|GO:0043565
Car04g03345 244 SMART halz 186 230 IPR003106 GO:0006355|GO:0043565
Car04g03345 244 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 244 - -
Car04g03345 244 Coils Coil 178 222 - -
Car04g03345 244 PANTHER - 5 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03345 Car-Chr4 61924932 61928153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03345 121 244 Homeobox Transcription Factor Family AT4G37790 63.200 5.82e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car04g03345 Homeodomain 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03345 K09338 - gmx:100807072 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03345 04 61924932 61928153 Car04g03345 04 61924932 61928153 ECH