Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03313 ATGCCTGGTGATGGAACTGGTGTGCTGGGAGTATTGTCTGATTGTACCATAGGGAGGGTCCAGACAAAAGAATTATTAGAAATCGGCGGTCAAACAAAACCAGATGAAATGAATCATGTTAAGGTAAATGAAACAGGGAGATTTGAGCATACAGAAGCATATGAATGCTCATCACATCCAGAGTCATCACATGCACAAAACATGCATGTAAAAAATGTCTCCAAGTATGTTCTCAGTGCAGCAAAGAATCCAGAGTTTGCCTCAAAATTGCACAATATTCTTTTAGAAAGCGGTGCATCACCTCCTTCTGATCTTTTTTCAGATATGAATCCCCGAGATAGGGGTTTAGATACTGTTCAAGCTGACCCAAATAGGTTGTTATTAAGCTATGATAAGTCTCTCTTGCTCCCTCAAGGAGTGGGCTCTGCTGGTGATACAAGGTTATGTCAATCGGCTCACCAGTTAGCCGAACAGCAAAAAGAATTATGCACAGATGCCATTGAATTTTATGATTCTTCACAAAGTGGGAATGTTTTTGCTACTGTTTCCGGTAAAGATTGTGATATAGAGCAATCTAATACATCAATTGTTGATTTTGCTTCTCCTAATACATGCAAGGCATGTAAAGAAAATTTTCTCGAGTCTTCCTTGCCCAAGGCAGCCCTTTCTTGCAAAAGGCATTATGGTGTTTACTGTTCTTGTTATGATGATGAAAGTGGTCCTAGTAATGAGGTTGGAGCTTCTTCTAGAAACACTGAAATTGGGAATGATTCAGTCACTCAGATAAACGAGACGGTCCATGGAGATTGTGTCCTATATGATGATGGTAAAAGCAAGAAAGTTCACCCAATACTTGGTGAAGACACAGAATGGGAAATTCAATGGGAAGATCTTCGTATTGGCGAGCGTATTGGTATTGGTTCTTACGGTGAAGTTTACCGTGCTGATTGCAATGGCACTGAAGTTGCTGTAAAGAAGTTTCTAGACCAAGATTTCTCTGGCGATGCACTAGATCAGTTCAAATCGGAAATTGAGATTATGCTAAGGCTGCGACATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCTCCACATTTCTCTATCTTGACAGAGTTTCTTCCGAGAGGCAGTTTATATAGGCTATTGCATCGTCCCAATCTTGTACTTGATGAGAAGAGACGGTTGCGTATGGCTCTTGATGTGgctaagggaatgaattacttgcacaccagccatcctccTGTTGTCCATCGAGATTTAAAGTCTCCAAACCTTCTTGTTGACAGGCATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGTACGAAGAACCATACATTTTTGTCATCGAAGTCATGTGCTGGAACGCCTGAGTGGATGGCTCCAGAAGTCTTAAGGAATGAGCCTGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTGACTACCACGAAAATCCCATGGCACGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGTCTTGAAATTCCAGAAGATATGGATCCAGTAGTAGCTCAAATAATACGTGATTGCTGGCAAATGGAGCCACACTTGAGACCATCTTTCGCACAGCTGGTGTCTCGTCTTTACCGTCTTCGCCAACTGGTTGTCCGTAAAACAGGATCTACACATTAA 1698 0.4087 MPGDGTGVLGVLSDCTIGRVQTKELLEIGGQTKPDEMNHVKVNETGRFEHTEAYECSSHPESSHAQNMHVKNVSKYVLSAAKNPEFASKLHNILLESGASPPSDLFSDMNPRDRGLDTVQADPNRLLLSYDKSLLLPQGVGSAGDTRLCQSAHQLAEQQKELCTDAIEFYDSSQSGNVFATVSGKDCDIEQSNTSIVDFASPNTCKACKENFLESSLPKAALSCKRHYGVYCSCYDDESGPSNEVGASSRNTEIGNDSVTQINETVHGDCVLYDDGKSKKVHPILGEDTEWEIQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDFSGDALDQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRLLHRPNLVLDEKRRLRMALDVAKGMNYLHTSHPPVVHRDLKSPNLLVDRHWVVKVCDFGLSRTKNHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTKIPWHGLNPMQVVGAVGFQNKRLEIPEDMDPVVAQIIRDCWQMEPHLRPSFAQLVSRLYRLRQLVVRKTGSTH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03313 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Car04g03313 565 Gene3D Phosphorylase Kinase; domain 1 291 375 - -
Car04g03313 565 PRINTS Tyrosine kinase catalytic domain signature 372 385 IPR001245 GO:0004672|GO:0006468
Car04g03313 565 PRINTS Tyrosine kinase catalytic domain signature 477 499 IPR001245 GO:0004672|GO:0006468
Car04g03313 565 PRINTS Tyrosine kinase catalytic domain signature 521 543 IPR001245 GO:0004672|GO:0006468
Car04g03313 565 PRINTS Tyrosine kinase catalytic domain signature 411 429 IPR001245 GO:0004672|GO:0006468
Car04g03313 565 PRINTS Tyrosine kinase catalytic domain signature 458 468 IPR001245 GO:0004672|GO:0006468
Car04g03313 565 ProSiteProfiles Protein kinase domain profile. 298 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g03313 565 PANTHER SERINE-THREONINE PROTEIN KINASE 271 560 - -
Car04g03313 565 SUPERFAMILY Protein kinase-like (PK-like) 287 551 IPR011009 -
Car04g03313 565 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Car04g03313 565 Pfam Protein tyrosine and serine/threonine kinase 298 550 IPR001245 GO:0004672|GO:0006468
Car04g03313 565 CDD STKc_MAP3K-like 304 550 - -
Car04g03313 565 SMART serkin_6 298 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g03313 565 PIRSF TyrPK_CSF1-R 386 563 - -
Car04g03313 565 PIRSF TyrPK_CSF1-R 281 390 - -
Car04g03313 565 PIRSF TyrPK_CSF1-R 20 104 - -
Car04g03313 565 Gene3D Transferase(Phosphotransferase) domain 1 377 561 - -
Car04g03313 565 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 271 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03313 Car-Chr4 61617861 61622501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03313 29 564 MAP Kinase Kinase Kinase AT5G11850 56.569 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Car04g03313 PK_Tyr_Ser-Thr 4.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03313 K04424 - gmx:100779137 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03313 04 61617861 61622501 Car04g03313 04 61617861 61622501 ECH