Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03308 ATGAAAATAGAAGTCAATGACTTCACTAGTGAAGAACGTGAAGTGGCTGAAGCTATTCTTTTATTGCAAACACCATTTCAAAAGAAGAAGACTATGAAAATAGTTTTAAATGGTAAAAAGATTTGTGAAGGAACATATAATAACAATGTATGTTCATCAAAAATCAATTCTAATGTTGCTATGAAAGATGAATATCACCCTTCAGGTATAAAAATTGGATTACCTGCGTATATTGGAGAAACCATAAGCCCTCAATATAAAAGAATTAGATTATCTAAATCTGTTGGAGTGTGCAACTATAGTAAGGAATCCATACACTCTTCAAATAAAGCAATTGGATCATCTACCGTTGTTGCAGGTGATAGTAAGGTATTTCTACACTCTCTAGATAGCAACAACAATGTTACTATGAAAAATGAATATCACCCTCCAGATATACCATCAATTCAAGGTCTTTCAATCGATAATATTATTGGATGTAGTAAGCCTTTTGAGAAGAACCTTCAAAAAAGTGATTTGGAGAAGAGCCAAAATAGATTGTTTTTGAGCAAGAAACATGCAGAAACATATTTCTTGCCGTTGTTGAGAGAAGGTGAAGACATTAAAGAAGGAGTAGATGTCATTGTCTATGATATGCAAGGTACTACGTTCTCCATGACATTCAAGATTTGGGCTAAAAAATATTATGTTCTCATGGGAGGATGGAAGAATTTCTTTGAAGCACATGACTTGCAAGCAGATACAGATTGTGTAACAGTGTGGATGTTTCGTCATTTTGAAACCGATAATTTGTGTTTTGCGCTTAGCGTGAGAAGAATATCCACTAAAAATAAAAAATCTCTTTAG 846 0.3333 MKIEVNDFTSEEREVAEAILLLQTPFQKKKTMKIVLNGKKICEGTYNNNVCSSKINSNVAMKDEYHPSGIKIGLPAYIGETISPQYKRIRLSKSVGVCNYSKESIHSSNKAIGSSTVVAGDSKVFLHSLDSNNNVTMKNEYHPPDIPSIQGLSIDNIIGCSKPFEKNLQKSDLEKSQNRLFLSKKHAETYFLPLLREGEDIKEGVDVIVYDMQGTTFSMTFKIWAKKYYVLMGGWKNFFEAHDLQADTDCVTVWMFRHFETDNLCFALSVRRISTKNKKSL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03308 281 SMART B3_2 164 272 IPR003340 GO:0003677
Car04g03308 281 CDD B3_DNA 164 272 IPR003340 GO:0003677
Car04g03308 281 Pfam B3 DNA binding domain 164 251 IPR003340 GO:0003677
Car04g03308 281 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 128 276 - -
Car04g03308 281 SUPERFAMILY DNA-binding pseudobarrel domain 164 266 IPR015300 -
Car04g03308 281 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 128 276 IPR005508 GO:0003677
Car04g03308 281 ProSiteProfiles B3 DNA-binding domain profile. 165 274 IPR003340 GO:0003677
Car04g03308 281 Gene3D - 159 280 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03308 Car-Chr4 61593225 61594070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03308 161 277 B3 DNA Binding Superfamily AT4G03170 42.373 1.53e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g03308 B3 3.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03308 - - mtr:MTR_3g013810 169.088