Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03307 ATGAAAACAGAAGGCAATGATTTTACTAGTGAAGAATGTGAAGTGGCTGAAGCTATTCTTTTATTGCAAATATTGTTCCAAAAGAAGAAGACCGTGAAAATAGTTTCAAAAAGAGAAAATATTTGTGAAGGAAAATATAGCAATAGTAACGATGTATGTTCATCAAAAATTAATTCTAATATTGCTATGAAAGATGAATATCACCCTGAAGGTATAAAAAACAGATTACCTACATATATTGCATCGTGCAGCTATAATAAGGAACCCATAAGCCCTCAATATAAAAGAATTAGATTATCTAAATATAGTGCACTGTGCAACTATAGTAAGGAATCCATACATTCTTCAAATAAAGCAATTGGATCATCTACTATTATTATAGGTGATAGTAGGGTATCTATACACCCTCTAGATAACAACAACAATGTTACTGTGGCAAGTGAATATCATCCTCCAGATATACCATCAATTCAAGGCCTATCAATTAATAATGTTATTGGATGTAGTAAGCCTTTTGAGAAGAACCTTCAAAAAAGTGATTTGGAGAAGAGACAAAATAGATTGTTTTTGAGCAAGAAACATGCAGAAACATATTTCTTGCCTTTGTTGAGAGAAGATGAAGACGTTAAAAAAGGAATAGATGTCATTGTCTATGATATGCAAGGTACTACGTTCTCCATGACATTCAAGATTTGGGCTGAAAAATATTATGTTCTCACGGGAGGGTGGAAGAATTTCTTTGAAGCACATGAATTGCAAGCAGGTATAGATTGCATCACAGTGTGGATGTTTCGTCATTTTGAAACTAATAATTTATGTTTTGCGCTTAAAGTGAGAAGATCATCCATAAAAAATGAGAAATCTCTTTAG 870 0.3241 MKTEGNDFTSEECEVAEAILLLQILFQKKKTVKIVSKRENICEGKYSNSNDVCSSKINSNIAMKDEYHPEGIKNRLPTYIASCSYNKEPISPQYKRIRLSKYSALCNYSKESIHSSNKAIGSSTIIIGDSRVSIHPLDNNNNVTVASEYHPPDIPSIQGLSINNVIGCSKPFEKNLQKSDLEKRQNRLFLSKKHAETYFLPLLREDEDVKKGIDVIVYDMQGTTFSMTFKIWAEKYYVLTGGWKNFFEAHELQAGIDCITVWMFRHFETNNLCFALKVRRSSIKNEKSL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03307 289 Gene3D - 166 288 IPR015300 -
Car04g03307 289 CDD B3_DNA 172 280 IPR003340 GO:0003677
Car04g03307 289 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 137 284 IPR005508 GO:0003677
Car04g03307 289 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 137 284 - -
Car04g03307 289 SMART B3_2 172 280 IPR003340 GO:0003677
Car04g03307 289 Pfam B3 DNA binding domain 172 255 IPR003340 GO:0003677
Car04g03307 289 SUPERFAMILY DNA-binding pseudobarrel domain 172 274 IPR015300 -
Car04g03307 289 ProSiteProfiles B3 DNA-binding domain profile. 173 282 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03307 Car-Chr4 61590196 61591065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03307 169 285 B3 DNA Binding Superfamily AT4G03170 44.068 1.72e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g03307 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03307 - - mtr:MTR_3g013810 165.236