Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03306 ATGAAAATAGAAGTCAATGACTTCACTAGTGAAGAACGTGAAGTGGCTGAAGCTATTCTTTTATTGCAAACGCCATTTCAAAAGAAGAAGACTATGAAAATAGTTTTAAATGGTAAAAAGATTTGTGAAGGAACATATAATAACAATGTATGTTCATCAAAAATCAATTCTAATGTTGCTATGAAAGATGAATATCACCCTCCAAGTATAAAAATTGGATTACCTGCGTATATTGGAGAAACTATAAGCCCTCAATATAAAAGAATTAGACTATCTAAATCTGTTGGAGTGTGCAACTATAGTAAGGAATCCATACACTCTTCAAATAAAGCAATTGGATCATCTACCGTTGTTGCAGGTGATAGTAAGGTATTTCTACACTCTCTAGATAGCAACAACAATGTTACTATGAAAAATGAATATCACCCTCCAGATATACCATCAATTCAAGGTCTTTCAATCGATAATATTATTGGATGTAGTAAGCCTTTTGAGAAGAACCTTCAAAAAAGTGATTTGGAGAAGAGCCAAAATAGATTGTTCTTGAGCAAGAAACATGCAGAAACATATTTCTTGCCGTTGTTGAGAGAAGGTGAAGACATTAAAGAAGGAGTAGATGTCATTGTCTATGATATGCAAGGTACTACGTTCTCCATGACATTCAAGATTTGGGCTAAAAAATATTATGTTCTCATGGGAGGATGGAAGAATTTCTTTGAAGCACATGACTTGCAAGCAGAAACAGATTGTGTAACAGTGTGGATGTTTCGTCATTTGAAATCGATAATTTGTGTTTTGCGCTTAGCGTGA 810 0.3395 MKIEVNDFTSEEREVAEAILLLQTPFQKKKTMKIVLNGKKICEGTYNNNVCSSKINSNVAMKDEYHPPSIKIGLPAYIGETISPQYKRIRLSKSVGVCNYSKESIHSSNKAIGSSTVVAGDSKVFLHSLDSNNNVTMKNEYHPPDIPSIQGLSIDNIIGCSKPFEKNLQKSDLEKSQNRLFLSKKHAETYFLPLLREGEDIKEGVDVIVYDMQGTTFSMTFKIWAKKYYVLMGGWKNFFEAHDLQAETDCVTVWMFRHLKSIICVLRLA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03306 269 CDD B3_DNA 164 257 IPR003340 GO:0003677
Car04g03306 269 Pfam B3 DNA binding domain 164 250 IPR003340 GO:0003677
Car04g03306 269 Gene3D - 159 267 IPR015300 -
Car04g03306 269 SMART B3_2 164 269 IPR003340 GO:0003677
Car04g03306 269 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 127 261 - -
Car04g03306 269 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 127 261 IPR005508 GO:0003677
Car04g03306 269 SUPERFAMILY DNA-binding pseudobarrel domain 164 267 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03306 Car-Chr4 61588172 61588981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03306 161 261 B3 DNA Binding Superfamily AT4G03170 44.118 7.49e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g03306 B3 2.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03306 - - mtr:MTR_3g013810 147.517