Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03303 ATGACTCCTGTTTCTCTTAACCCACAACCTCAAAATGCCCAATTCTTCATTTCTCCTATTAATCAGGACTCTACTCCTACCTTTTTTAATTTACTTGATCCAACTCAAACCACCTTTCAGAATTTTGGAGACTTTAGACAAAATCATGATCATCAGGGTGATGATAATAAGGTGGTATTGCATGATGGATCATCAAGCAATGAACAAGTCTATAATTCAAGTGAGGAACCAGCAAGAAGTGCACGTGACACTAAAAATTTAACATCCTTAGAGGAAGATAGCAAAAGTGGTCACGGGTCTACGAAATGGATGTCTTCAAAAATGAGATTGATGAAAAAAATGATGAGACCAAGTAGTAGTGGATCCACTGACAAAGCAATTATGATGAATGCTCAAAGATATGAAAATAGGTACAGCCAAACAAGCCCAACTCGTAACAACAACAACACAGTTAGGGTTTGTTCGGATTGTAACACAAACTCTACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGACCCTTTGCAATGCTTGTGGAATTAGACAAAGGAAAGCAAGAAGGGCAATGGCAGAAGCTACAAATGGTTCTACAAAAACTAAAGTGCATAACAAGGATAAGAAGAAGCCTCTTGTGAATGATTTTACACAATTCAAACATAAGAACAAGTCTACCTCTGGCTCATCATctactactactactactGCCGGCTCATCTCAAGATGTGAAGAAACTTGAATGTTATGCATTAAATTTGAGGGAAAATTCAGATTTTGAAGGTGCATTTCTTTCCGATGAAGTAGCTGAGGCGGCACTACTTCTAATGGATATATCTTGTGGTTATATTTATTCTTAA 855 0.3731 MTPVSLNPQPQNAQFFISPINQDSTPTFFNLLDPTQTTFQNFGDFRQNHDHQGDDNKVVLHDGSSSNEQVYNSSEEPARSARDTKNLTSLEEDSKSGHGSTKWMSSKMRLMKKMMRPSSSGSTDKAIMMNAQRYENRYSQTSPTRNNNNTVRVCSDCNTNSTPLWRSGPMGPKTLCNACGIRQRKARRAMAEATNGSTKTKVHNKDKKKPLVNDFTQFKHKNKSTSGSSSTTTTTAGSSQDVKKLECYALNLRENSDFEGAFLSDEVAEAALLLMDISCGYIYS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03303 284 MobiDBLite consensus disorder prediction 59 77 - -
Car04g03303 284 MobiDBLite consensus disorder prediction 218 237 - -
Car04g03303 284 Gene3D - 148 211 IPR013088 GO:0006355|GO:0008270
Car04g03303 284 ProSiteProfiles GATA-type zinc finger domain profile. 148 184 IPR000679 GO:0006355|GO:0043565
Car04g03303 284 MobiDBLite consensus disorder prediction 41 105 - -
Car04g03303 284 MobiDBLite consensus disorder prediction 78 98 - -
Car04g03303 284 CDD ZnF_GATA 153 190 IPR000679 GO:0006355|GO:0043565
Car04g03303 284 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 24 283 - -
Car04g03303 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 196 - -
Car04g03303 284 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 24 283 - -
Car04g03303 284 SMART GATA_3 148 199 IPR000679 GO:0006355|GO:0043565
Car04g03303 284 ProSitePatterns GATA-type zinc finger domain. 154 179 IPR000679 GO:0006355|GO:0043565
Car04g03303 284 Pfam GATA zinc finger 154 187 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03303 Car-Chr4 61549125 61551570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03303 96 283 C2C2-Gata Transcription Factor Family AT4G26150 36.190 1.52e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car04g03303 GATA 2.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03303 - - gmx:100780326 262.307