Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03296 ATGATGAAAGGTTTTGCTGTGGATGAAAATATGTCAAATTTGACATCTGTTTCAAGTGAAATAAGTGCTTCTTCAGCAAACAAGAATGAAAATGCTTCAACAAAAAGGAAGAGAAATCTTCCTGGCCACCCAGACCCTGAGGCAGAAGTGATAGCTTTGACACCCCAAACCTTGATAGCAACAAACAGGTTCCTTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAGAATCTTCAGCTTCATAAAAGAGGACATAATTTGCCATGGAAGTTAAAGAAAAGAAACAACAATGAAGTTATAAGGAAGAAAGTGTATGTGTGTCCAGAGCCAACATGTGTTCACCATGATCCTTTAAGAGCACTTGGTGACCTAACTGGAATCAAGAAGCACTTTTTTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCTAAGAAGTATGCTGTTCAATCCGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAAGTGTGATTGTGGAACCCCTTTCTCAAGAAGGGACAGTTTTATCACTCATAGAGCCTTCTGTGAAGTTTTATCACATGAGAATAATATTAATGGCACATCAATGAACCCTCAAAATTTCACTTCTCACTCTCAATTTCATCATAGCCATGGAAGTTTTGAAGCACCATCACTTAAAAAAGAAGAAGAGATGAATCACTTCAATTTAAGACAACAAATACCATCATGGTTCTCTAGCTCAACACCACAACAACAAATTCTCCCAATCCACCATCATCAAAACCCTAACCCTACAACTTTATTTCCTTCTTTCAACTCCAATAATAATTCTTCTGATTCTCCTCACATGTCTGCCACTGCATTACTACAAAAAGCATCACAAATAGGTGTAACAATGAACAAAACTGAAACCTCTATTTGTAGGCCCCACTTAAACATGCAAACTCACGTGCCTCAATATGGAAATAATAATATGGTTATTATGCCATCACGTGAAGAAATAGGGACAGATTTTTCTCATTGTTTGGAATCTTATGAGAATAAAGCTACAATAACCTCTCATAATAATAATTGCTTTGAAGCATCTTCTTCTGTTTTGCATGATCAAGGGTTTGTGGTAGGAATGTTTGATGATCAACAAAGAGATGataataataataataataataataataataaCTTTGGAGAACTTGTTTCAAAACCAACACAATATTATTCTCATTTTGGTAAAACCAACAAGGGTGGTGGTGGTGCAAATGATGATGGTGAAATGACAAAGGATTTTTTGAGTCTTGCTGCATTTTCACAAAGAGATCAATACTTGTTCAATATATCTACAAATATTGATGATCCTTTGGCTTCTTTATCGTTTGGTAAGCAAAATCAAAATCAAACTTTTTGGAGAGGTTAA 1413 0.3553 MMKGFAVDENMSNLTSVSSEISASSANKNENASTKRKRNLPGHPDPEAEVIALTPQTLIATNRFLCEICNKGFQRDQNLQLHKRGHNLPWKLKKRNNNEVIRKKVYVCPEPTCVHHDPLRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTPFSRRDSFITHRAFCEVLSHENNINGTSMNPQNFTSHSQFHHSHGSFEAPSLKKEEEMNHFNLRQQIPSWFSSSTPQQQILPIHHHQNPNPTTLFPSFNSNNNSSDSPHMSATALLQKASQIGVTMNKTETSICRPHLNMQTHVPQYGNNNMVIMPSREEIGTDFSHCLESYENKATITSHNNNCFEASSSVLHDQGFVVGMFDDQQRDDNNNNNNNNNNFGELVSKPTQYYSHFGKTNKGGGGANDDGEMTKDFLSLAAFSQRDQYLFNISTNIDDPLASLSFGKQNQNQTFWRG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03296 470 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Car04g03296 470 MobiDBLite consensus disorder prediction 17 47 - -
Car04g03296 470 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 9 440 - -
Car04g03296 470 MobiDBLite consensus disorder prediction 380 397 - -
Car04g03296 470 Gene3D Classic Zinc Finger 45 110 - -
Car04g03296 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Car04g03296 470 SMART c2h2final6 106 136 IPR013087 -
Car04g03296 470 SMART c2h2final6 64 86 IPR013087 -
Car04g03296 470 SMART c2h2final6 141 161 IPR013087 -
Car04g03296 470 MobiDBLite consensus disorder prediction 378 397 - -
Car04g03296 470 Gene3D Classic Zinc Finger 121 199 - -
Car04g03296 470 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Car04g03296 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03296 Car-Chr4 61462687 61465844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03296 7 303 IDZ Gene Family AT1G55110 56.509 1.51e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g03296 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03296 K25870 - vvi:100257789 426.787