Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03280 ATGGCATTTGGATTTGGAGTACTATTTCTTCTTGTTTTGCTCATTTGTTTCAATGTCAATTCTGTGGATTCAGATGATGGTGCTACATTGTTAGAGATAAAGAAGTCATTTAGGGATGTGGATAATGTTTTATATGATTGGACAAACTCACCAACATCAGATTATTGTGCTTGGAGAGGGATCTCATGTGATAATGTCACATTCAATGTTGTTGCACTCAATCTTTCAGGGCTTAATCTTGAAGGCGAAATTTCGCCTGCAATAGGGAGCCTTCAAAGCTTGGTTTCTATTGATCTAAAAGAAAACCGGCTATCGGGTCAGATACCTGATGAAATTGGTGACTGCTCTTCGTTGATAAGCTTGGACTTGTCTTTTAACGAAATTCGAGGGGATATACCATTTTCAATTTCTAAGCTGAAACAACTGGAAAATCTGGCTTTGAAAAATAACCAGTTGATTGGACCAATTCCTTCAACATTGTCACAGATTCCTAACTTGAAGATTCTGGATTTGGCACAAAATAATCTTAGTGGTGAAATTCCAAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTCGGCTTGCGAGGGAACAATTTGGTCGGTTCACTATCTCCAGACATGTGCCAGTTAACCGGCTTGTGGTATTTTGATGTGAAGAACAATAGCTTAACAGGAAGTATTCCTGAAAACATAGGCAATTGTACCTCCTTCCAGGTCTTGGATTTATCTTACAACCAGTTAACTGGAGTGATTCCATTCAATATTGGGTTTCTGCAAATAGCAACCTTGTCATTGCAAGGAAATAAACTTTCTGGACAGATTCCATCAGTGATTGGTCTCATGCAAGCACTTGCTGTGTTAGATTTGAGTTGTAACATGTTAACTGGACCAATCCCTCCTATTTTGGGGAATTTGACGTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACTGGCTTCATCCCTCCGGAGCTCGGAAATATGACAAAGCTTCACTATTTGGAACTGAATGATAATCATCTAAGTGGACGCATCCCTCCCGAGCTCGGAAAGCTTACTGAACTATTCGACTTAAATGTTGCTAACAACAACCTTGAGGGGCCGATTCCCGGTAATATTAGCTCGTGTACAAACCTTAACAGCCTAAATGTACATGGGAATAAGCTTAATGGAACAATACCCCCTACTTTGCAAAGCTTGGAGAGTATGACTTCTTTGAATCTTTCGTCAAACAACCTTCAAGGCGTTATTCCAATTGAGTTGTCACGGATTGGTAATTTGGATACATTGGACATTTCAAACAATAAATTAATTGGATCAATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTGAATCTTAGCAGAAACAATTTAACAGGACCTATTCCAGCAGAATTTGGTAATCTTAAAAGTGTTATGGAAATTGATCTTTCTCATAACAAACTCTCTGACTTGATTCCTGTAGAGCTTGGTCAGCTACAGAACATAGCATCATTGAGGCTTGAAAACAACGAATTAACTGGGGATGTGGCGTCACTTGTAAATTGTCTTAGTCTTTCTCTGATTAATGTATCCTATAACAATCTAGTTGGTGTTATTCCTACAAGCAACAACTTTACCAGGTTTTCACCTGACAGTTTCATTGGAAATCCTGGTCTTTGTGGTAATTGGCTTCATTTTCCATGTCAAGGCTCTCGCCCTGCTGAGCGAGTTACATTATCTAAGGCGGCTATTCTTGGAATTACGCTTGGTGCCCTTGTAATTCTTCTTATGATACTGCTGGCAGCTTGCCGGCCACACAACCCGTCTCCGTTTCCAGACGGATCACTCGAAAAACCAGGTGACAAATCAATTACTTACTCGCCTCCAAAACTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGACGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGAAATGGTGCATCAAGTACGGTTTATAAATGCGTTCTTAAAAATTGCAAGCCAGTTGCTATAAAGAGACTCTATTCTCACTTTCCACAATACTTGAAAGAATTTAAAACCGAGCTTGAGACGGTTGGCAGCATTAAGCACCGGAATCTAGTCAGTCTCCAAGGCTACTCTTTGTCACCGTATGGTCACCTTCTCTTTTATGACTACATGGAAAATGGAAGTCTATGGGATCTTCTTCATGGACCTACCACAAAGAAGAAAAAACTCAACTGGGATCTGCGTCTAAAAATAGCACTTGGAGCAGCGCAAGGACTTGCATATTTACACCATGATTGCAGTCCTCGCATCATCCACAGGGACGTGAAATCATCAAATATTTTACTAGATGCAGACTTTGAGCCCCATCTCACCGATTTCGGCATTGCCAAAAGTCTCTGCCCTACAAAGTCACATACTTCTACTTACATTATGGGCACAATTGGCTACATTGACCCTGAGTATGCCAGAACTTCCCGTCTCACCGAGAAATCTGATGTTTACAGCTACGGAATTGTTTTACTCGAATTGCTAACTGGGAGAAAAGCTGTTGACAATGAATCCAACCTCCATCATCTAATTTTGTCGAAGACAGCTGACAATGCAGTAATGGAAACAGTTGATCCCGACGTAACTGCCACATGCAAGGACTTAGGAGCAATAAAGAAAGTTTATCAGCTTGCTTTATTATGCACAAAGAGGCAGCCAGCTGATAGGCCAACAATGCATGAAGTGGCGCGCGTTTTAGCAAGTCTTGTGCCGTTAACCACCCCGCCGAAACAACTAACACCTCCACTGCCTGCAATATCTGCCAAACTGCCATGCTACATGGATGAGTATGCAAATCTCAAGACACCTCATTTAGTTAACTGTCCTTCCATGAGCACCTCAGATGCTCAACTTTTCCTCAAGTTTGGAGAAGTAATCTCTCAGAACAGTGAATGA 2955 0.4078 MAFGFGVLFLLVLLICFNVNSVDSDDGATLLEIKKSFRDVDNVLYDWTNSPTSDYCAWRGISCDNVTFNVVALNLSGLNLEGEISPAIGSLQSLVSIDLKENRLSGQIPDEIGDCSSLISLDLSFNEIRGDIPFSISKLKQLENLALKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVKNNSLTGSIPENIGNCTSFQVLDLSYNQLTGVIPFNIGFLQIATLSLQGNKLSGQIPSVIGLMQALAVLDLSCNMLTGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGRIPPELGKLTELFDLNVANNNLEGPIPGNISSCTNLNSLNVHGNKLNGTIPPTLQSLESMTSLNLSSNNLQGVIPIELSRIGNLDTLDISNNKLIGSIPSSLGDLEHLLKLNLSRNNLTGPIPAEFGNLKSVMEIDLSHNKLSDLIPVELGQLQNIASLRLENNELTGDVASLVNCLSLSLINVSYNNLVGVIPTSNNFTRFSPDSFIGNPGLCGNWLHFPCQGSRPAERVTLSKAAILGITLGALVILLMILLAACRPHNPSPFPDGSLEKPGDKSITYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGNGASSTVYKCVLKNCKPVAIKRLYSHFPQYLKEFKTELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTTKKKKLNWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTADNAVMETVDPDVTATCKDLGAIKKVYQLALLCTKRQPADRPTMHEVARVLASLVPLTTPPKQLTPPLPAISAKLPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03280 984 SMART LRR_typ_2 211 235 IPR003591 -
Car04g03280 984 SMART LRR_typ_2 450 473 IPR003591 -
Car04g03280 984 SMART LRR_typ_2 330 354 IPR003591 -
Car04g03280 984 SMART LRR_typ_2 91 115 IPR003591 -
Car04g03280 984 SMART LRR_typ_2 474 498 IPR003591 -
Car04g03280 984 SMART LRR_typ_2 402 426 IPR003591 -
Car04g03280 984 SMART LRR_typ_2 163 187 IPR003591 -
Car04g03280 984 Gene3D Ribonuclease Inhibitor 187 259 IPR032675 -
Car04g03280 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Car04g03280 984 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Car04g03280 984 SUPERFAMILY Protein kinase-like (PK-like) 630 919 IPR011009 -
Car04g03280 984 Gene3D Phosphorylase Kinase; domain 1 624 727 - -
Car04g03280 984 Pfam Protein kinase domain 655 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g03280 984 Gene3D Transferase(Phosphotransferase) domain 1 728 927 - -
Car04g03280 984 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Car04g03280 984 ProSiteProfiles Protein kinase domain profile. 652 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g03280 984 SUPERFAMILY RNI-like 204 538 - -
Car04g03280 984 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Car04g03280 984 ProSitePatterns Protein kinases ATP-binding region signature. 658 680 IPR017441 GO:0005524
Car04g03280 984 Pfam Leucine rich repeat 428 487 IPR001611 GO:0005515
Car04g03280 984 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 8 971 - -
Car04g03280 984 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 971 - -
Car04g03280 984 SUPERFAMILY L domain-like 48 259 - -
Car04g03280 984 Gene3D Ribonuclease Inhibitor 443 569 IPR032675 -
Car04g03280 984 Gene3D Ribonuclease Inhibitor 260 346 IPR032675 -
Car04g03280 984 Gene3D Ribonuclease Inhibitor 347 442 IPR032675 -
Car04g03280 984 SMART serkin_6 652 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03280 Car-Chr4 61278817 61286792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03280 93 983 Receptor kinase-like Gene Family AT5G07180 65.022 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Car04g03280 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03280 K20718 - gmx:100782307 1738.01