Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03272 ATGGACGGTGGTACTCCTTACAATCCTCGTACTGTCGAAGAAGTATTCCGGGATTTCAAGGGTCGCAGAGTTGCTTTAATTAAAGCCCTCACTACCGATGTGGGAGAGTTCTATCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAGGTGAATCTGCCAGCTGAGGAAGTGCCTCCTGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCTTTGGTTGCTGTGCACAGTGACGCTTGGTTGCTTTCTGTGTCATTTTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGACAGGAAGCGCCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTTGTTACAGGGTTGGCCAAGAATCAAGGAAAGGAAAAGATGTCAGTTTCTAATAATAGCAGCAACAAGTCCAAATCAAACTCTAAGGAAAAAAATTTAAAACCAATGCAAATGCAATCAATGGACAATGATGAGGATGGTCTAGGTGTGGACGAGGAAGATGAAGAAGAGCATGGAGAAACATTGTGTGGGGCATGCGGAGAGAGCTATGCAGCTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCACGGAAAATGCGTGAAGATAACACCGGCAAGGGCTGAACATATCAAACAATACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGCCCTTGA 756 0.4378 MDGGTPYNPRTVEEVFRDFKGRRVALIKALTTDVGEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVSFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGLAKNQGKEKMSVSNNSSNKSKSNSKEKNLKPMQMQSMDNDEDGLGVDEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03272 251 PANTHER CPG BINDING PROTEIN 4 251 IPR045104 GO:0006355|GO:0042393
Car04g03272 251 MobiDBLite consensus disorder prediction 145 174 - -
Car04g03272 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Car04g03272 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 251 - -
Car04g03272 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Car04g03272 251 Pfam PHD-finger 198 247 IPR019787 -
Car04g03272 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Car04g03272 251 MobiDBLite consensus disorder prediction 145 189 - -
Car04g03272 251 CDD PHD_AL_plant 197 247 IPR044104 -
Car04g03272 251 SMART PHD_3 197 245 IPR001965 -
Car04g03272 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Car04g03272 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03272 Car-Chr4 61151783 61156412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03272 1 250 Alfin-like Transcription Factor Family AT3G42790 76.096 2.13e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Car04g03272 Alfin 2.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03272 - - cam:101493315 470.314