Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03263 ATGACAACTAAAAAGGTAACATGGAAATCTATGATCTTGATCCTAAATTGTTACAAAAGTAAATACCCTTTGGAGGAATCAAAGGAACAAGTTTTAAAACAAGGTTCTTTCCAAAGGCTGTGTTTATCAGATATAAGTAATTCAAGTTCAACTCAAGCAATTGAAGATCTTTCAATATCTTTTGCTGGCTCTAAACTTTATGCATTCACCTTAGAGGAGCTAAAGGAAGCAACACATAGTTTCTCATGGAGTAATATGTTAGGTGAAGGTGGTTTTGGACCTGTTTATAAAGGCTTTGTTGATGATAAACTTAGGCAAGGTTTAAAGGCTCAAACTGTTGCTGTTAAATGTTTAGATTTGGATGGCTTGCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGTTAAGGCATCCACATCTTGTGAAGTTAATTGGATATTGTTATGAAGATGAACACAGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTGGAGAATCAACTATTCAGAAGGTACTCTGCTGCTATGCCATGGTCAACTAGGATGAAAATTGCATTAGGAGCTGCTAAGGGTTTGGCTTTCCTTCATGAAGCAGATAAACCTGTAATATATAGAGATTTCAAAGCTTCAAATGTCTTACTAGACTCGGATTATACAGCTAAACTCTCAGATTTTGGACTAGCTAAGGATGGACCTGAAGGGGAAGAAACACATGTAACAACGCGTATAATGGGAACACATGGTTATGCTGCTCCCGAGTACATCATGACAGGTCACCTCACAACAAAGAGTGATGTGTATAGCTATGGAGTGGTTCTACTGGAATTGCTTACAGGAAAAAGGGTAGTGGACAAGTCCCTGCAATCAAAAAGAGGGAAGAGCTTAGTGGAATGGGCAAGGCCTATGTTAAGAGATCCAAAGAAACTACACCGTATCATAGACCGTAGACTTGAAGGTCAATTTCCTATGAAAGGAGCTATAAAGGTTGCTATGTTGGCTTTCAAATGTTTGTGTCACCACCCAAATCCAAGACCTTCCATGAGTAATGTTGTTAAGATTTTGGAACCACTTCAAGATTTTGACGATGTTTTCATTGGTCCTTTTGTTTATGTTGCCGTAAATGAAAATGGTGACAAAGATCAAATATAG 1164 0.3832 MTTKKVTWKSMILILNCYKSKYPLEESKEQVLKQGSFQRLCLSDISNSSSTQAIEDLSISFAGSKLYAFTLEELKEATHSFSWSNMLGEGGFGPVYKGFVDDKLRQGLKAQTVAVKCLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNVLLDSDYTAKLSDFGLAKDGPEGEETHVTTRIMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGKRVVDKSLQSKRGKSLVEWARPMLRDPKKLHRIIDRRLEGQFPMKGAIKVAMLAFKCLCHHPNPRPSMSNVVKILEPLQDFDDVFIGPFVYVAVNENGDKDQI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03263 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Car04g03263 387 ProSiteProfiles Protein kinase domain profile. 81 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g03263 387 SUPERFAMILY Protein kinase-like (PK-like) 55 359 IPR011009 -
Car04g03263 387 PANTHER OS01G0588500 PROTEIN-RELATED 21 384 - -
Car04g03263 387 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Car04g03263 387 CDD STKc_IRAK 87 362 - -
Car04g03263 387 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Car04g03263 387 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Car04g03263 387 PANTHER KINASE 1B 21 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03263 Car-Chr4 61073437 61076764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03263 69 359 Glycoside Hydrolase AT3G07070 52.041 7.34e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Car04g03263 PK_Tyr_Ser-Thr 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03263 - - gmx:100802636 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03263 04 61073437 61076764 Car04g03263 04 61073437 61076764 ECH
Car05g02877 05 73726537 73728904 Car04g03263 04 61073437 61076764 ECH
Car07g00375 07 3292554 3294629 Car04g03263 04 61073437 61076764 ECH
Car01g01253 01 15594614 15599018 Car04g03263 04 61073437 61076764 ECH
Car07g03021 07 57042093 57044862 Car04g03263 04 61073437 61076764 ECH