Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03258 ATGGCTGGTTCCAATCCTACTACCACTAATAATAACAACTCATGTTCCAACAATAACACTAGTAATAATAAGTTGTACAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTATCTGAAATTAGACTTCCAAATAGTCGTGAGAGAATATGGTTAGGATCCTATGACACACAAGAGAAAGCCGCTCGAGCTTTCGATGCGGCTCTCTTTTGTTTGCGTGGTCGTCATGCTGGTTTCAATTTTCCTAATACACCTCTTAGCATCAATGTACCTTTTCATGGTCACAATTCTCTTTCTCCACAAGAGATTCAAGAGGTTGCTTCTAAATTTGCCAATGATCCACCAATTGAGCTTACTCAAGAAGATCAAGATCAACAAGTACCTCTAGAGTCACAAAATAATAGTGTCAATTCCAATAATTCAAATTCTCTATATGATCATAATAATGATGGGAGTGTGCAAGTAGATTATGGTGACTTGAGAATGATGGATTGGAGATTTGATGATATGTTGGATGATTTGAATGAAGTTGCTTGCTCCGATTCCGGCCTCTATTCCGGTCTAGAAAAGATGCAATACTCCACTCAACTTTTTGAGGAGGATAATGTCTACCAAATTGAAGGTGAAGATGCTTTTTCAAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 672 0.3824 MAGSNPTTTNNNNSCSNNNTSNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALFCLRGRHAGFNFPNTPLSINVPFHGHNSLSPQEIQEVASKFANDPPIELTQEDQDQQVPLESQNNSVNSNNSNSLYDHNNDGSVQVDYGDLRMMDWRFDDMLDDLNEVACSDSGLYSGLEKMQYSTQLFEEDNVYQIEGEDAFSNHSFLWSWNF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03258 223 MobiDBLite consensus disorder prediction 1 24 - -
Car04g03258 223 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Car04g03258 223 MobiDBLite consensus disorder prediction 122 149 - -
Car04g03258 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 223 - -
Car04g03258 223 Pfam AP2 domain 26 74 IPR001471 GO:0003700|GO:0006355
Car04g03258 223 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Car04g03258 223 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Car04g03258 223 CDD AP2 24 84 IPR001471 GO:0003700|GO:0006355
Car04g03258 223 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Car04g03258 223 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Car04g03258 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 10 223 - -
Car04g03258 223 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03258 Car-Chr4 61018710 61019381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03258 17 181 AP2-EREBP Transcription Factor Family AT1G74930 49.405 4.14e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car04g03258 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03258 - - mtr:MTR_1g014820 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03258 04 61018710 61019381 Car04g03258 04 61018710 61019381 ECH
Car05g02885 05 73822353 73823495 Car04g03258 04 61018710 61019381 ECH