Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03250 ATGGTTTGTGAAATGGAAAGTGATTGTATTGAAGACATGATGGACATTGAAATCTTATCTTCAATGTGGCCAGATGATGTTGGAACTGATGTTGGAAAACAATTCAACATAGAAAAACCAGGAAGGGATCAAGATATGTTAAAAGAAGTAACAATCTTAGAAGAACCAACTATAGCTGATTTTCAAAGACTAATGGAGCTTACGAATTATACTGATAAAGGGTCGTCTCAGTTAGCCTATTTAATGAAACATTGGGAGTATAAGCAGGCGAACGCTGTTCGCCTGCTTAGAGAAGAACTTGACAACCTTAGCAAACAAAGGAAGGAAGTCGAGCTAAGAAAATTGGAGATACTTAAAGACAGTAATCGATTCGAGGAAGAAAGTTACGGGGGAGACAAACGACCAGTTTCAATATTAGACGATGTTTATTATACATGGCAAGATCTACCTGTTGCGATAAGGAAAAGCGACATTGTTGTTCAAAGCAAGAGGATTGAGATTGAGGCTGAGTATGATACTGTTATTTATTGGAAACAGCAGGCAGTTGATTTGGAAAGACGGTTGGAGGCGAGTATACGGAGAGAGCAGACATTAATGGAGAAATTGCAAGAAAGTATTGAGACTATTGAAAGACAGTCTTCACCTGTTGAAGAACTTTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTCATACTTCAAAATGCACCTGTTGTAATTGGCCATCAGGACAAAGAGTTGCGGTATCGATTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACCGATGTCGAAATTTTCACAGGATCAGGTGTTAAGGAATCTCAAGATTTCAAGAGAGAAGTGATGGAGAAAGGATTGCCTGCAAAAAAGGAAATAACTTTTGAGACAGAATTGTTTGGATCAAAGACATTTTTGATATATGTAGAACCTGTGTTTAGTAAGGCAGGAGAAACAATTGGAGTAAACTATATGGGAATGGAAATAACCGATCAGGTGAGAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACAGAACTTAATAAAACGATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTTTCTGGTGTTGTTAGCATGGCTGAAATTCTTACTACAACAAAACTTGATAAGGAACAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAACGACATACTTGATCTTTCCAAGGTTGAATCAGGAGCTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAGATGTTAACCTTGGAAGGAAATGTAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTCGACAGATACTCACAAATTTAATCAGCAATGCTGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTGTTCCAGAGCCACAATTTGCCAAAGAAGAAGAATGCCACCAAAAGGTGACAGAAGACCAGTCAACTATTTCAGCAAATGGATTGAAGGAGGAGAAACATATATCATCACCAAGAAGTAGATGTGATCAAAATCTTATTGATGACAAGAAACAACACGATGACCATCCAATCCAAAATCATGCACTTAGCAATGAATGTAGATCTTCATTTAACAGTGAATGCTCGATGAATGATGATGATGTTACTGATGAACAAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTCAGTGCAGATCATGCTAGAAAATATGGAGGCACAGGCCTAGGACTAGCAATATGTAAACAACTGGTTGAGTTAATGGGAGGTCGTCTAACAGTGACTAGCAAAGAAAATTGTGGTTCTACCTTCACATTCATACTACCATACAAAGTTTCAACAGCTTGTGATAATTCAGATGACCCAGATGAGCTTTCATATGTTAATGATAATGAAGACGACACAACTGAGGGATTCTTCCAATTCCAACCGCGAACATTAGGCTCTCTTTTCACTTCTAATGGATCCACTAGGCCACAAAATATATTACCTGGCTACCGAATCGCACACAAGTTCAATGGCTTTCCAGACAATCCTTACTCAAACCTCTCAAGTAACATCATTTCAAATGGGACAAATTCCCTTGAGGATGCATCTTCAGTTATTGTCGATGCTTTGGATATGCCTGAATCAACAAGTTCCTCAAGTTGCAGCCCAGAAACAAAGCATGAAAGTTTAGTTAATGGAAACAAAGAGAACCGTGATTTTAAGGCACATGCTATGTTGCAAAATTGTAGTGCAAATGGAAACTCTAGTCAATATAAGGAGGAAAGTAGAGAAATGAATTTAGCAAGAACTTCAAGCGAGCCGCAGCAAACATGTCAGGGTCAAGGGAAGGAAGAAAGTACTTCACAATGTGTtattagcagtagttgcagtactagtagtactaTCACATCATCATCATCAGAAGTAACCGAATCCACATTAAAGCCGAATATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATAGCATGGATGTGGTGAATAACGGAGTTGAAGCCATACGTGCGGTTCAAAACCATTCTTATGACATTATTTTGATGGATGTTTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTGTTATGAGGAAACAGGCAGTTGGGATGCTGCAAAAGAAGCTGGAATTGAACAAAGTTTATTGGCTTCGGACGAATGTTCTATACCACCTAAAAAGCGGATCCACATTGTCGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAAGAATGTTTTGCCAATGGTATGGACTCATTTGTGTCAAAACCTAAACACTTTCCTAATAGGTTACGAATTGGAAGCTTTGGACATTGGCATTACAAAGGAACTTCACAAAAGACAATCATTCAAGAGAAAAGCTACTCCGAGTACGCCGAGTCGCAGATACCTTTGCCATACTCATTCGCCACACTCTTTGCGAGCACTTGGAACAATATATTATCAATATTGCAAATTGGTTATCTCATTCTCATTTAA 3255 0.3788 MVCEMESDCIEDMMDIEILSSMWPDDVGTDVGKQFNIEKPGRDQDMLKEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDSNRFEEESYGGDKRPVSILDDVYYTWQDLPVAIRKSDIVVQSKRIEIEAEYDTVIYWKQQAVDLERRLEASIRREQTLMEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGNVADDIPIEVTGDVLRIRQILTNLISNAVKFTHQGKVGINLYVVPEPQFAKEEECHQKVTEDQSTISANGLKEEKHISSPRSRCDQNLIDDKKQHDDHPIQNHALSNECRSSFNSECSMNDDDVTDEQTHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKENCGSTFTFILPYKVSTACDNSDDPDELSYVNDNEDDTTEGFFQFQPRTLGSLFTSNGSTRPQNILPGYRIAHKFNGFPDNPYSNLSSNIISNGTNSLEDASSVIVDALDMPESTSSSSCSPETKHESLVNGNKENRDFKAHAMLQNCSANGNSSQYKEESREMNLARTSSEPQQTCQGQGKEESTSQCVISSSCSTSSTITSSSSEVTESTLKPNILLVEDNKINIMVTKSMMKQLGYSMDVVNNGVEAIRAVQNHSYDIILMDVFMPVMNGLQTTKLIRCYEETGSWDAAKEAGIEQSLLASDECSIPPKKRIHIVAMTANTMSESAEECFANGMDSFVSKPKHFPNRLRIGSFGHWHYKGTSQKTIIQEKSYSEYAESQIPLPYSFATLFASTWNNILSILQIGYLILI 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03250 1084 Coils Coil 185 212 - -
Car04g03250 1084 CDD HATPase_EvgS-ArcB-TorS-like 491 684 - -
Car04g03250 1084 ProSiteProfiles Response regulatory domain profile. 888 1030 IPR001789 GO:0000160
Car04g03250 1084 SMART HKATPase_4 486 687 IPR003594 -
Car04g03250 1084 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Car04g03250 1084 ProSiteProfiles Histidine kinase domain profile. 382 687 IPR005467 -
Car04g03250 1084 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1019 - -
Car04g03250 1084 SUPERFAMILY CheY-like 887 1017 IPR011006 -
Car04g03250 1084 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 455 684 IPR036890 -
Car04g03250 1084 Coils Coil 346 366 - -
Car04g03250 1084 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Car04g03250 1084 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 685 IPR003594 -
Car04g03250 1084 MobiDBLite consensus disorder prediction 822 855 - -
Car04g03250 1084 Gene3D - 363 440 - -
Car04g03250 1084 PRINTS Bacterial sensor protein C-terminal signature 612 626 IPR004358 GO:0016310|GO:0016772
Car04g03250 1084 PRINTS Bacterial sensor protein C-terminal signature 647 665 IPR004358 GO:0016310|GO:0016772
Car04g03250 1084 PRINTS Bacterial sensor protein C-terminal signature 671 684 IPR004358 GO:0016310|GO:0016772
Car04g03250 1084 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1019 - -
Car04g03250 1084 Coils Coil 93 120 - -
Car04g03250 1084 Gene3D PAS domain 216 352 - -
Car04g03250 1084 SMART REC_2 887 1023 IPR001789 GO:0000160
Car04g03250 1084 Gene3D - 441 691 IPR036890 -
Car04g03250 1084 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Car04g03250 1084 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Car04g03250 1084 MobiDBLite consensus disorder prediction 839 855 - -
Car04g03250 1084 Pfam Response regulator receiver domain 889 954 IPR001789 GO:0000160
Car04g03250 1084 CDD REC_hyHK_CKI1_RcsC-like 889 1016 - -
Car04g03250 1084 Gene3D - 881 1024 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03250 Car-Chr4 60906171 60913039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03250 1 547 Histidine Kinase Gene Family AT5G10720 68.545 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g03250 HATPase_c 2.8e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03250 - - cam:101512841 1963.73