Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03248 ATGCCTTACCCCCATAACCACAACCACACATCTATAGTTACCCTCCCAATCCAATTCAACACACTCACAACACTCTCAACCTTCAAAGCAACTCTCAACTCAATAAACAAACAAATGGCTACCAAGCTATGCGATTCCTGCAAGTCAGCAACGGCAACACTCTTCTGCCGTTCCGACTCTGCTTTCCTCTGTATCGTTTGTGACTCCAACATTCACGCTGCTAACAAACTCGCCTCCCGCCACCACCGCGTCTCGCTTTGCGAAGTCTGCGAGCAAGCTCCTGCTCACGTCACTTGTAAAGCGGACGCCGCCTCACTCTGTATCTCCTGCGACCACGACATCCACTCCGCTAATCCCCTCGCACGCCGCCACGAACGCGTCCCTCTCACAACCTTCAATCACAACAGCAACCAACCGTTCTTTTCCGACGCCGAACACGATGCTGACGTCACCAACGAAGAAGCTGAAGCAGCTTCCTGGCTGCTCCAAACTCCTTCTCACCCTAAAGGCCCCGATCTCAACTCCTCTCACTATTCCTTCCATGAAATCGACAACGCAGGCATCGATTTCGTCTCCGTAGACGCTAAAACAGACTCGCCAGAGCAACACAGTCCCGGTGGCACAGCAGACGGAGTCGTGCCGGTGCAGTCTCATAGCAAAACCGCCGCAGAACACTACTCCGATATCAACATCGATTTCTCTAACTCCAAACCTTTTACTTACAGTTACAATCACAACGCATCATCGCCGTCGATGGAGGTTGGAGTTGTACCGGACGGCAACGCGATGTCGGAGATATCGTACTGCTGTTACGGCAGGGCGGCGACGGAGGCGGTGCAGATCACGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAATCGAAAGTTCGAGAAGACTATTCGTTATGCTTCAAGGAAAGCGTATGCAGAAACGAGGCCTAGAATTAAAGGAAGGTTCGCAAAACGCACTGATATGAATGTGAATGTGAATCTGATCGCTGAGGATGAGTCTTATACTGGATACGGCGTCGTTCCTTCCTGTTGA 1062 0.5141 MPYPHNHNHTSIVTLPIQFNTLTTLSTFKATLNSINKQMATKLCDSCKSATATLFCRSDSAFLCIVCDSNIHAANKLASRHHRVSLCEVCEQAPAHVTCKADAASLCISCDHDIHSANPLARRHERVPLTTFNHNSNQPFFSDAEHDADVTNEEAEAASWLLQTPSHPKGPDLNSSHYSFHEIDNAGIDFVSVDAKTDSPEQHSPGGTADGVVPVQSHSKTAAEHYSDINIDFSNSKPFTYSYNHNASSPSMEVGVVPDGNAMSEISYCCYGRAATEAVQITAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMNVNVNLIAEDESYTGYGVVPSC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03248 353 ProSiteProfiles Zinc finger B-box type profile. 39 86 IPR000315 GO:0008270
Car04g03248 353 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 34 352 - -
Car04g03248 353 ProSiteProfiles Zinc finger B-box type profile. 82 129 IPR000315 GO:0008270
Car04g03248 353 SMART bboxneu5 39 86 IPR000315 GO:0008270
Car04g03248 353 SMART bboxneu5 87 129 IPR000315 GO:0008270
Car04g03248 353 CDD Bbox1_BBX-like 43 86 - -
Car04g03248 353 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 34 352 IPR045281 GO:0009909
Car04g03248 353 Pfam B-box zinc finger 42 85 IPR000315 GO:0008270
Car04g03248 353 Pfam B-box zinc finger 85 129 IPR000315 GO:0008270
Car04g03248 353 ProSiteProfiles CCT domain profile. 286 328 IPR010402 GO:0005515
Car04g03248 353 CDD Bbox1_BBX-like 86 129 - -
Car04g03248 353 Pfam CCT motif 286 328 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03248 Car-Chr4 60890005 60892013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03248 39 352 C2C2-CO-like Transcription Factor Family AT5G24930 51.639 2.88e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Car04g03248 zf-B_box 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03248 - - cam:101512206 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03248 04 60890005 60892013 Car04g03248 04 60890005 60892013 ECH