Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03239 ATGGCATTGTTTCGTAAGTTCTTCTATAAGAAGCCTCCTGATGGCCTTCTTGAAATTACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGACGAAGACGAATATAAAGTGTATATAGGAGGAATAATTAGGCAAATTGGTGAGCACTTTCCCGATGCTTCATTTATGGTGTTCAACATGAGAGAAGGAGAAAACCAGAGCCATATATCAAACATTTTGTGCGACTATGATATGACTGTGATGGATTATCCTAGACAGTACGAAGGTTGTCCGTTACTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAATTGGCTTCAACTTGGTCATCAAAACATCGTCTTGATGCATTGCGAACGAGGCGGGTGGCCAGTTTTAGCGTTTATGCTGGCCTCACTCTTGATTTATAGAAAAATGTATACAGGGGAGCAAAAAACACTAGACATGATATATAAGCAAGCGCCTCGCGAACTTTTGCAGTTGATGTCACCGTTGAATCCATTACCTTCACAATTGAGGTATCTTCAGTACATTTCAAGGAGAAACGTCGGTTCGGAATGGCCGCCTCTGGATAGGGCGCTTACGTTGGACTGCGTGATTATAAGACAAATTCCTAATATGGATGGAGAGGGTGGCTGCCGTCCTATATTTAGGATATATGGACAAGACCCTTTTATTCCTGCAAATCGGACTCCCAAAGTTCTCTTTTCCACTCCAAAAAGGAGCAAACTTGTTCGACACTACAAGCAGGATGATTGTGAACTTGTCAAGATTGATATCCATTGTCATGTTCAAGGCGATGTTGTACTTGAGTGTATTAGTTTGGACAGTGATTTGGAACGTGAACAAATGATGTTCCGAGTGATGTTTAATACAGCATTCATAAGGTCAAATATTTTGATGCTTAACCGCGATGAAATTGACATGTTATGGAATGCTAAAGATCACTTCCCTAAAAATTTTAGAGTAGAGGTTCTTTTCTCGGATATGGATGCTTCGTCTTCTGTTATTTCAATCGATATGCCTAATATCGAGGAGAAAGAAGGCCTACCTGTTGAAGCATTTGCTAAAGTTAAGGAAATTTTCAGCCATGTTGAGTGGCTAGATTCGAAGACAGATGTAGCGAGTATGCTCCAACAGATCACAGCATCAAATATCCTTCTCGAAAGGTTGGACAGCGGGGCATCTGCTTCACCAACCTGCTTGCTAAATAAGTCATTGTCTGGAAGATTTAAATTTGATTCAAAGACACTAAATGAAACAAGCAATCTGAAATATTCCGTTCATGAGGAACTTTCTGAGTCTCCATTGAAATCATCTGAGGATGCTCCCATGGATAAAATGATTGAACCATTAAAGGCATTGTCAGAGGAGAAAATCAATACTCCTGCAAGTTTAGGTCTAGCGAACCAACCGAGTCACTCATTCGATATGTCAAAAGACTCAGATTCTACTAAAAAGGAGACTGAATCATCAAAATCCAAAGAGTCATTGGAAAATGGTCCTGAATTTCCTACTTTTATGGCTAAAGTGGAACAATCTATCCCCTTAATTGAACCATCAGTAGATGAAAATTCTATGGAAAGGAAGACTGGATCATTGGAATCTGAGGAAAAGAATATTGAATCATTAGAACCGAAGGCGAAAACAATGATCGGAAAATCAGAATCAACGGCGTTGTCAGAAAATGATATCAAAAGTCCTACATCCGAGGTTCATAAGAAACAAAGTAGTCCCTTACTTGAACCTTCCATTGATGAAAAACCAATTAAAAAGAAGATTGACCCTCAAGAGTTGCAGGTTTCTCTTCAGCTGCCAACCCAATCTAAAATAATTTCTCCCCGGATGCATCAAGCTATTCGATCTGCTTCGGTTTCTTATTCCAACTCGTTACTAGGTTCACCTGTAGAGTCGATATCTCCTGCTTCAGACTCAAAGGTGCCAAAGTCTGTAGAACCTAGTTCTACAAGTATtcatacatcatcatcatcatcaCTGGCATTGCTTCCATCTTCGCCTTCAAAGTCTTCAGTTGATCCTCCTGCTGCTGTGGAAAAGACTTTCAAACCCCTTGTTCCTATTCCTCCTCCACCTCCACCTTCACCTCCTCAACAAGATGTGAACAACTCTGCTGCTATGTCCGGCCCTCCTCCACCACCTCCACCACCACCTCAACAAACCTCATCATCTTCAATACCTCCTCCTCCTCTTCCTCCTCCAAGAAGTGTGAACAACTCTGCTGCTATGTCCGGCCCTCCTCCACCACCTCCACCACCACCTCAACAAACCTCATCATCTTCAATACCTCCTCCTCCTCTTCCTCCTCCAAGAAGTGTGAACAACTCTGCTGCTATGTCCGGTCCTCCTCCACCACCTCCACCACCACCTCAACAAACCTCATCATCTTCAATACCTCCTCCTCCTCTTCCTCCTCCAAGAAATGTGAACAACTCTGCTGCTATGTCCGGCcctcctccaccacctccaccaccaAGACACTTTGACACCACATCTAGTGGTTCTACTCCTACACCATTAGCCCCGCCACCACCACCTCCTCCTGCTTTTGCAAACCAAAATTCTCTTTCTAAAAGCTCAGCAAATGTTCCACCTGTACCTCCACCTCCTTCTCCTTCTGCCAATGGATTATTAAACTCCGGCACTGCCGCACCACAGTCTCATAATGTACCTCCAATTCCTGGACCACCCGGAACCGTGCCTCCTCCAATTCCTGGACCACCTTCGGGTGCATTCGGTGCAAAGGGACGTGGAATGCTGCGAGCTAATTCAAAAACTCAGACTAAAAGGAGCAACCTTAAACCTTACCATTGGTTAAAGTTAACAAGGGCCATGCAAGGTAGCTTGTGGGCTGAGACACAAAAACTTGATGAAACTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAGCGACTTTTCTCTGCAGCTACTCCAACTAGTCATGAAAAAGGAGGAAAATCAAATCGCCGTTCGGGGCAAAAACCTGACAAAGTTCAACTAATTGAACTCAGGCGGGCGTATAACTGTGAAATTATGCTTACAAAAGTCAAAATCCCATTGCCTGATTTAATGGGTGCTGTTCTTGCATTGGATGATTCTGTGTTATACGTTGATCAGGTTGAGAATCTCATAAAGTTCTGTCCGACTAAAGAAGAAACTGACCAACTCAAGGCCTATACTGGAGACAAAGAAAACTTGGGGAAGTGTGAACAGTTTTTCTTAGAATTAATGAAAGTTCCGCGAGTGGAAAGCAAGCTAAGAGTTTTCTGTTTTAAGATGCAATTCAGTTCACAGGTTATAGAGCTCAGAAGGGACTTGAATATTGTAAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAATTGAAAAGAATCATGCAGACCATTCTTTCTCTCGGTAATGCTTTGAACCACGGAACTGCAAGAGGTTCTGCTGTCGGGTTCCGATTGGATAGTCTTCTTAAACTCACTGATACACGAGCCCGAAACAACAAAATGACCCTCATGCATTATCTTTGTAAGGTTCTTGCTGAAAAGCTTCCGGAACTTTTAGATTTCCCCAAAGACCTGGTCAATTTAGAGGCTTCAACCAAGGTACAATTAAAATATTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAATTCAAGAACTGTCTGCATCGGAGAATGATGGACCTGTGTCAGAAACATTCTGCCAGATTCTGAAAGAATTTCTTAGTGATGCTGAAGCTGAAGTGAGGTCTTTAGCTCAGCTTTATGCCAATGTGGGTAGAAATGCAGATGCATTGGCGCTATACTTTGGAGAAGACCCCGCACGTTGCTCATTTGAACAAGTTGTATCTACTCTTCTCAATTTTGTGAGGATGTTCATCCGAGCACACGAAGAAAACTACAAGCAGATTGAATATGAAAAAAAGAAAGCAGTGAAGGAAGCAGCAGAAAATGAAAAGTTGAAACTAACTGCTAGAAATGAATCTGAACACATGATGAGGACCATCAAGAGTGGAGATATTCAATAA 4077 0.4165 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMDEDEYKVYIGGIIRQIGEHFPDASFMVFNMREGENQSHISNILCDYDMTVMDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGHQNIVLMHCERGGWPVLAFMLASLLIYRKMYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRQIPNMDGEGGCRPIFRIYGQDPFIPANRTPKVLFSTPKRSKLVRHYKQDDCELVKIDIHCHVQGDVVLECISLDSDLEREQMMFRVMFNTAFIRSNILMLNRDEIDMLWNAKDHFPKNFRVEVLFSDMDASSSVISIDMPNIEEKEGLPVEAFAKVKEIFSHVEWLDSKTDVASMLQQITASNILLERLDSGASASPTCLLNKSLSGRFKFDSKTLNETSNLKYSVHEELSESPLKSSEDAPMDKMIEPLKALSEEKINTPASLGLANQPSHSFDMSKDSDSTKKETESSKSKESLENGPEFPTFMAKVEQSIPLIEPSVDENSMERKTGSLESEEKNIESLEPKAKTMIGKSESTALSENDIKSPTSEVHKKQSSPLLEPSIDEKPIKKKIDPQELQVSLQLPTQSKIISPRMHQAIRSASVSYSNSLLGSPVESISPASDSKVPKSVEPSSTSIHTSSSSSLALLPSSPSKSSVDPPAAVEKTFKPLVPIPPPPPPSPPQQDVNNSAAMSGPPPPPPPPPQQTSSSSIPPPPLPPPRSVNNSAAMSGPPPPPPPPPQQTSSSSIPPPPLPPPRSVNNSAAMSGPPPPPPPPPQQTSSSSIPPPPLPPPRNVNNSAAMSGPPPPPPPPRHFDTTSSGSTPTPLAPPPPPPPAFANQNSLSKSSANVPPVPPPPSPSANGLLNSGTAAPQSHNVPPIPGPPGTVPPPIPGPPSGAFGAKGRGMLRANSKTQTKRSNLKPYHWLKLTRAMQGSLWAETQKLDETCRAPEFDMSELERLFSAATPTSHEKGGKSNRRSGQKPDKVQLIELRRAYNCEIMLTKVKIPLPDLMGAVLALDDSVLYVDQVENLIKFCPTKEETDQLKAYTGDKENLGKCEQFFLELMKVPRVESKLRVFCFKMQFSSQVIELRRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVNLEASTKVQLKYLAEEMQAISKGLEKVIQELSASENDGPVSETFCQILKEFLSDAEAEVRSLAQLYANVGRNADALALYFGEDPARCSFEQVVSTLLNFVRMFIRAHEENYKQIEYEKKKAVKEAAENEKLKLTARNESEHMMRTIKSGDIQ 1358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03239 1358 MobiDBLite consensus disorder prediction 562 585 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 793 822 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 630 931 - -
Car04g03239 1358 Gene3D Formin, FH2 domain 956 1350 IPR042201 -
Car04g03239 1358 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Car04g03239 1358 MobiDBLite consensus disorder prediction 531 553 - -
Car04g03239 1358 PANTHER FORMIN-J 1 1351 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 721 750 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 851 865 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 990 1010 - -
Car04g03239 1358 SMART PTEN_C2_2 197 337 IPR014020 -
Car04g03239 1358 Pfam Formin Homology 2 Domain 939 1309 IPR015425 -
Car04g03239 1358 MobiDBLite consensus disorder prediction 472 486 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 903 923 - -
Car04g03239 1358 Gene3D - 196 341 - -
Car04g03239 1358 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Car04g03239 1358 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Car04g03239 1358 MobiDBLite consensus disorder prediction 757 786 - -
Car04g03239 1358 SMART it6_source 450 1356 IPR015425 -
Car04g03239 1358 MobiDBLite consensus disorder prediction 472 600 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 698 713 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 630 686 - -
Car04g03239 1358 MobiDBLite consensus disorder prediction 487 505 - -
Car04g03239 1358 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Car04g03239 1358 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Car04g03239 1358 ProSiteProfiles Formin homology-2 (FH2) domain profile. 937 1335 IPR015425 -
Car04g03239 1358 Coils Coil 1310 1342 - -
Car04g03239 1358 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1010 1336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03239 Car-Chr4 60753509 60762696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03239 1 456 FH2 protein (formin) Gene Family AT2G25050 64.579 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03239 - - pvu:PHAVU_001G042000g 1585.08