Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03218 ATGTGCCCTGAATGTGTTAGCCCACTTAATGATATAGATAAGATATTGGATTGTGAGATGCGTCTCACTGTAGCTGGCGAAAGGGATGCCAAAAGTTTGGGGTCAAAGCAAAGTTTGGTCAAACAATATCTTGTTAAGTGGAAGGGTCTATCACATTTGCACTGCAGATGGGTGCCAGAGGAAGAGTTTCTGAAGGCTTTCAAGAACAATCCACGAATAAAGACCAAATTAAACAATTTTCACCGTCAAATGGCACCAGTTAGAAAAATGGAGGAAGATTTTGCTGCCATTCGACCTGAATGGACTATGGTTGATCGAATACTTGATTGCAGAGGGGAGGATGATGCGAAGGAATATCTTGTGAAGTGGAGAGAGCTTCCTTATGATGAATGCCATTGGGAGCTTGAGACTGATATCTCTTCGTTTCAGGCAGAAATTGAGAGATTCAATATATTTCAGTCTAGATCTAGGAAATATTCTTCTAGTAAGCAAAAAAGCAGTGTTAAGGATGATGCTGTATTGAAGCAGCAGCAAAGAGAATTTCAACAGTATGAACACAGCCCCGAGTTTCTTTCAGGGGGTACACTACATCCATATCAACTTGAAGGATTGAACTTTCTACGATTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCCTCCCTTTTCGAAGAGAATGTTTATCCCCATCTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGCAAATTGGGCACCACAAATGAATGTTGTTATGTATTCTGGTTCTGCCCAAGCTCGTCGCATTATTAGAGAATATGAATTTTACTTTCCGAAGAATCCGAAAAAGATGGAGAAAAAGAAATCTAAAAAAATAGTTACTAAAAGAAAGCTGGAAAGGGTTAAGTTTGATATCCTTTTGACATCGTATGAGATGATAAACTCTGATACCACAATATTGAAGCCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCCAAATTGTTTTCTTCATTGACACAATACTCTAGCAGACATCGTGTGCTTTTAACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTCGGAAGTTTAGAGGAGTTCCAAGAAGAGTTTGAGGATATCAATCAAGAGCAACAGATTTTGAGGCTTCATAAAATGTTGGCCCCACATCTCCTGAGAAGAGTGAAGAAAGATGTCATGACTGAACTACCTCCTAAAAAGGAGCTTATTATACGTGTTGAATTGAGCAGCAAACAAAGAGAATACTATAAGGCAATTTTGACTCGTAATTATCAGATATTAACTCGCCCTAATGGAGCCCAAATTTCTCTTATCAATGTTGTCATGGAACTGCGTAAGCTCTGTTGTCATCCCTACATGTTGGAAGGAGTTGAACCAGTTATTCACGAAGAAAACAAAGCATACAAGCAATTGCTGGAATCATCGGGCAAGTTGCAATTGTTGGACAAGCTGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTTATATATTCCCAATTTCAGCACATGCTAGATTTGCTTGAAGATTATTGTGTTTACAATCATTGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGCATAGATCGGTTTAATGCTAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGACTGGGGATAAATCTTGCAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCCATGGCCAGAGCTCATCGACTTGGACAAAATAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACAATTGAAGAAAGGATGATGCAAATAACAAAAAAGAAAATGGTGTTAGAACACTTAGTTGTAGGCAGGATAAAGGCTCAAAATATTAACCAGGAAGAGTTGAATGATATCATAAGGTATGGTTCAAAGGAGTTGTTCACTGATGAGAATAATGATGTGGGAAAGTCTCGTCAAATTCATTACGATGATGCTGCTATAGACAGATTGTTGGACCGCGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGAAGATGAAAATGGATTTCTTAAAGCCTTTAAGGTGGCAAATTTTGAATACATTGATGAAGCTGAGGCTGCAGTGGAAGCAGAAGAAAAAAGAGAAACAGAGAGTAAACTTTCTGTGAGCGGTTCAGAAGGGAAAAATTACTGGGAAGAGTTGCTAAAAGACAGATATCAAGAGCATGAAGTTGAAGAACTTAATACCTTGGGCAAAGGGAAGCGAAACCGCAATAAATTTCTGGGGCAAGATTTTGCTGGTCTAGAAGTTACAATCTCTGACGGTGAGGATGACAATTACAAAGTGGATCTTACTCATGGCAATTCAAATTCAACAGAAACTGCTGCTTCTAGAAGGCCTTGCAAAAAGAAAGCTCGTTCTGCAGATAACACAGATCCACTTCCCTTAATGGAAGGCGAAGGAAAATCACTACGAGTACTTGGTTTTAGTCGAAGTCAGAGGGCTGCTTTCCTTCAAATTTTAATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCACACATAAAGCAGAAGACTTATGAAGAAATCAAAGAGTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAAATGATTCCTCTTCATTCTCAGATGGTGTTCCAAAAGAAGGACTTCAAATACAAGATGTACTTATTAGAATTGCAGTTTTGCTATTGATAAGAGAAAAAGTGAAGTTTGCATCAGAAAACCCTGGCACTCCACTTTTTTCGGATGACATCTTGACACGCCGTGCTTTGAAAGCTGCAAAGATATGGAAGGAAGAGCACGATTTAGTCTTACTGCGTGCAGTTTTGAAGCATGGGTATGGGAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAATATTCAGACGGTCATCTGTCAGGAGTTGAACATTCCCTTCATAGATTTCCCAGTTCAAGGACAAGTTGGCTCTCAAGGGCAAaatggtgcaaataacacaaatgtggaatccccttgcaaccagtttagggagaacagtggctgcggcatggcagatgatgggtcacatggttcttctgatgctaGGAACCAAGAAAAGTTGTATCAAGATCAATTTGGAGAGATGCAGAGAAGACACATTGATTTTATAAAAAAGAGGCTACTTCTCTTAGAAAATTGTCTCAATGACGAGTACCAAAAAGAATACTGTGATGATATGGAAGCAAAGAGAGGGACCAATCAAGAACTTAAAAATGAAAAAGTGGCTACAAATGTACGAAGGCACACATTAGGGGAGTCTCGCACCCAAACAATCAATCAACTGCCTCAAGTAGAAGCAATAACTTCAGAAGAAATCTCTACTTCTGCTTGTGATAATGATCCAAATCGGTTGAAATTAGTGCATCTTTACAATGAGATGTGCACGGTCGTGGAGGAGAATACTGCAGATTTAGTTCGAACATCATGGTCCAGAAAACAGACAGAAGTCAATGCTATGAAGAATTTCCATCAACTGGAAACCATTTGTGGAGATGTCAACAGAATTCTAACACAACAAAATCAACACACTTTAAAGCCAATAGCAAATTCTGATAACAAATCAAATGTCCTATTACAGAATGCTGTTTTGGATTCCGAATAG 3798 0.3802 MCPECVSPLNDIDKILDCEMRLTVAGERDAKSLGSKQSLVKQYLVKWKGLSHLHCRWVPEEEFLKAFKNNPRIKTKLNNFHRQMAPVRKMEEDFAAIRPEWTMVDRILDCRGEDDAKEYLVKWRELPYDECHWELETDISSFQAEIERFNIFQSRSRKYSSSKQKSSVKDDAVLKQQQREFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVYPHLVVAPLSTLRNWEREFANWAPQMNVVMYSGSAQARRIIREYEFYFPKNPKKMEKKKSKKIVTKRKLERVKFDILLTSYEMINSDTTILKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFEDINQEQQILRLHKMLAPHLLRRVKKDVMTELPPKKELIIRVELSSKQREYYKAILTRNYQILTRPNGAQISLINVVMELRKLCCHPYMLEGVEPVIHEENKAYKQLLESSGKLQLLDKLMVKLKEQGHRVLIYSQFQHMLDLLEDYCVYNHWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQNNKVLIYRLITRGTIEERMMQITKKKMVLEHLVVGRIKAQNINQEELNDIIRYGSKELFTDENNDVGKSRQIHYDDAAIDRLLDRDQVGDEEATLDEDENGFLKAFKVANFEYIDEAEAAVEAEEKRETESKLSVSGSEGKNYWEELLKDRYQEHEVEELNTLGKGKRNRNKFLGQDFAGLEVTISDGEDDNYKVDLTHGNSNSTETAASRRPCKKKARSADNTDPLPLMEGEGKSLRVLGFSRSQRAAFLQILMRFGVGDFDWKEFTSHIKQKTYEEIKEYGTLFLSHIAEDINDSSSFSDGVPKEGLQIQDVLIRIAVLLLIREKVKFASENPGTPLFSDDILTRRALKAAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLNIQTVICQELNIPFIDFPVQGQVGSQGQNGANNTNVESPCNQFRENSGCGMADDGSHGSSDARNQEKLYQDQFGEMQRRHIDFIKKRLLLLENCLNDEYQKEYCDDMEAKRGTNQELKNEKVATNVRRHTLGESRTQTINQLPQVEAITSEEISTSACDNDPNRLKLVHLYNEMCTVVEENTADLVRTSWSRKQTEVNAMKNFHQLETICGDVNRILTQQNQHTLKPIANSDNKSNVLLQNAVLDSE 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03218 1265 ProSiteProfiles Chromo and chromo shadow domain profile. 10 92 IPR000953 -
Car04g03218 1265 Coils Coil 399 419 - -
Car04g03218 1265 ProSiteProfiles Chromo and chromo shadow domain profile. 102 164 IPR000953 -
Car04g03218 1265 MobiDBLite consensus disorder prediction 1046 1080 - -
Car04g03218 1265 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 150 IPR023780 -
Car04g03218 1265 Pfam Chromo (CHRromatin Organisation MOdifier) domain 29 68 IPR023780 -
Car04g03218 1265 Gene3D - 188 438 IPR038718 -
Car04g03218 1265 SMART ultradead3 192 405 IPR014001 -
Car04g03218 1265 CDD CD1_tandem 8 82 - -
Car04g03218 1265 Gene3D - 89 151 - -
Car04g03218 1265 Gene3D - 945 1118 - -
Car04g03218 1265 CDD CD2_tandem 100 149 - -
Car04g03218 1265 SUPERFAMILY Chromo domain-like 95 150 IPR016197 -
Car04g03218 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 429 IPR027417 -
Car04g03218 1265 SMART chromo_7 100 154 IPR000953 -
Car04g03218 1265 SMART chromo_7 9 85 IPR000953 -
Car04g03218 1265 SMART helicmild6 548 632 IPR001650 -
Car04g03218 1265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 394 IPR014001 -
Car04g03218 1265 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 963 - -
Car04g03218 1265 SUPERFAMILY Chromo domain-like 2 85 IPR016197 -
Car04g03218 1265 Gene3D - 439 663 IPR027417 -
Car04g03218 1265 SMART DUF1086_2 826 978 IPR009462 GO:0003677|GO:0006338
Car04g03218 1265 Pfam SNF2-related domain 216 496 IPR000330 GO:0005524|GO:0140658
Car04g03218 1265 MobiDBLite consensus disorder prediction 829 863 - -
Car04g03218 1265 SMART DUF1087_2 751 813 IPR009463 -
Car04g03218 1265 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 1 963 - -
Car04g03218 1265 Pfam CHD subfamily II, DUF1087 753 804 IPR009463 -
Car04g03218 1265 Gene3D - 9 85 - -
Car04g03218 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 692 IPR027417 -
Car04g03218 1265 Pfam CHD subfamily II, SANT-like domain 841 975 IPR009462 GO:0003677|GO:0006338
Car04g03218 1265 Pfam Helicase conserved C-terminal domain 519 632 IPR001650 -
Car04g03218 1265 MobiDBLite consensus disorder prediction 1046 1063 - -
Car04g03218 1265 CDD SF2_C_SNF 517 643 - -
Car04g03218 1265 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 683 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03218 Car-Chr4 60560408 60574911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03218 218 659 RAD5 or RAD16-like Gene Family AT1G02670 24.138 4.74e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g03218 SNF2_N 6.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03218 K11643 - gmx:100790230 1907.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03218 04 60560408 60574911 Car05g02922 05 74171945 74197171 PCT