Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03217 ATGACTGTGGTGGTGAAAGATGATAAGATGAATGATCTCAAAGATCAGTTTCCTATTGGAATGCGTGTTCTTGCTGTTGACGATGATAGAACATGCCTCAAGATTTTGGAGAGATTGCTTCAAAGGTGTCAATATCATGTAACCACTGCTCAAAACGCGATAACGGCTCTGAATTTGTTGAGAGAAAACAAAAACAATTTTGATCTTGTAATCAGTAATGTTCATATGCCTGACATGGATGGATTTCAGCTGCTTGAGCTTGTAGGACTTGAAATGGACCTACCTGTCATAATGTTTTCTGCCAATGATGATCCAAAGATGGTGATGAAGGGAATTGCTCATGGAGCTTGTGATTATCTGCTGAAACCTGTTAGAATGAAGGAAGTGCAAATCATTTGGCAGCATGTAATCAGAAAGAAGAAGACTTGTAAAACAAGCAATCAAAATGTGCCTAATTCGGATAGCGGAAATGGAATAGATTCAGCAGTGACAGCGAATTCGGATCAAAATGTAAAGCCATCCAAAAAAAGGAAGGATCAGAGtggtgatgatggtgaggagaatgatgatgatcatgacaatgaggatCCAACGGCTCCGAAGAAGCCTCGAGTTGTTTGGTCCGTGGAGCTACACCGCAAGTTTGTTGCTGCTGTTAATCATTTAGGCGTTGATAAAGCTGTGCCTAAAAAGATACTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCATCTTCAGAAATATAGACTCTATCTGAAAAAACTTAGTACAGTGCCAAACCAACAAGCTAACATGGAAGCAGCATTAGCTAGTTCAGACATATCCTATTCAAGATTGAATTCTCTCAATGGTGTTGGAGGAAATTTGCATACATTGAGTGCCTCTAGACAGTTTCATAACAACAACAATCCTTTCAGAACCTTTCCATCTAATGGCATGACTAATATATTGAACCCCAATGTGCATGGAATTGCTTCTTCTGGAACTCATCAGTTGAGTCATACACATAATGATCAGCTTAAGTTCCAATCGGTCGTCCCTCGCGCCAATCCGATAAATCTTGATCAATTGCAACACAATAGAGGTATTAGTCCTATGCAAAATGTGACCAATAAACTCTCAAATTATAAACCAAAAGTACCTTGTTCGGTTTTCGATATCTCGAACAAACCCTTGTTGCTGGAAGCAAACCCTCAAGACAAACAATACAAAATCAATTTAGCTTCACATCAGCCTCCACAATACAATGATATATGGTCAAACACTATGCAGTTACCACATGATTCAATGAATTCACAAGCTGTTGTTTTTACTAGTACTAATAATGTGGCATTTCAAGATTGGGATAGTAACAATAATATTCATGATGATGGAAGTTATCATTCTCAAGCGATTGGTAATTCAGTAGGAACTATGGTTCCTGTTGAATCAGAAGGTAACTTGGCCTACAATTATTGTGATCATTTACAAATGAAGCCTGACGCAATTGCCGAATTAACAGAATATAACTCATTGAAACCACATCAGGTATTTATGATGAATCACATGAAGGGTCAAAATACTGGAATCTCTCATAATCTTGGTTCATTGGAAGACTTGGTTTGTGACATGATAAAACAGAAACAAGAGAAGGTGAAATCAATGGATGGATATTTGTATGAAAATTATTCTGGTGGGACATCTATGTGA 1704 0.3691 MTVVVKDDKMNDLKDQFPIGMRVLAVDDDRTCLKILERLLQRCQYHVTTAQNAITALNLLRENKNNFDLVISNVHMPDMDGFQLLELVGLEMDLPVIMFSANDDPKMVMKGIAHGACDYLLKPVRMKEVQIIWQHVIRKKKTCKTSNQNVPNSDSGNGIDSAVTANSDQNVKPSKKRKDQSGDDGEENDDDHDNEDPTAPKKPRVVWSVELHRKFVAAVNHLGVDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKLSTVPNQQANMEAALASSDISYSRLNSLNGVGGNLHTLSASRQFHNNNNPFRTFPSNGMTNILNPNVHGIASSGTHQLSHTHNDQLKFQSVVPRANPINLDQLQHNRGISPMQNVTNKLSNYKPKVPCSVFDISNKPLLLEANPQDKQYKINLASHQPPQYNDIWSNTMQLPHDSMNSQAVVFTSTNNVAFQDWDSNNNIHDDGSYHSQAIGNSVGTMVPVESEGNLAYNYCDHLQMKPDAIAELTEYNSLKPHQVFMMNHMKGQNTGISHNLGSLEDLVCDMIKQKQEKVKSMDGYLYENYSGGTSM 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03217 567 CDD REC_typeB_ARR-like 23 137 - -
Car04g03217 567 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Car04g03217 567 SUPERFAMILY CheY-like 20 144 IPR011006 -
Car04g03217 567 Gene3D - 198 261 - -
Car04g03217 567 Gene3D - 21 195 - -
Car04g03217 567 PIRSF RR_ARR_type-B 3 561 IPR017053 GO:0003677|GO:0003700|GO:0009736
Car04g03217 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 562 IPR045279 GO:0009736
Car04g03217 567 SMART REC_2 21 133 IPR001789 GO:0000160
Car04g03217 567 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Car04g03217 567 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Car04g03217 567 MobiDBLite consensus disorder prediction 143 204 - -
Car04g03217 567 MobiDBLite consensus disorder prediction 143 170 - -
Car04g03217 567 Pfam Response regulator receiver domain 23 129 IPR001789 GO:0000160
Car04g03217 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 562 - -
Car04g03217 567 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Car04g03217 567 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03217 Car-Chr4 60554252 60558870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03217 15 567 Response Regulator Gene Family AT2G25180 40.575 9.44e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Car04g03217 Response_reg 1.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03217 - K14491 cam:101500109 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03217 04 60554252 60558870 Car05g02923 05 74199270 74203406 PCT